Variant report

Variant	rs6529896
Chromosome Location	chrX:5825331-5825332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11094874	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs3810687	0.92[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs5916269	0.92[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs7049300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869027	chrX:5052974-6043003	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2830398	chrX:5618240-5882060	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv949393	chrX:5637763-5883977	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv817415	chrX:5803207-5833017	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
5	esv988822	chrX:5824938-5825500	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:5799600-5828600	Weak transcription	Ovary	ovary
2	chrX:5806800-5833200	Strong transcription	Dnd41	blood
3	chrX:5818800-5827000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chrX:5819200-5825600	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chrX:5821200-5825400	Weak transcription	Brain Germinal Matrix	brain
6	chrX:5821200-5828400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chrX:5821200-5831200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chrX:5821800-5828200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chrX:5822200-5831200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chrX:5822600-5826200	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chrX:5822600-5828600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chrX:5823400-5826600	Strong transcription	Fetal Thymus	thymus
13	chrX:5824400-5825400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chrX:5824400-5829400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chrX:5824800-5828800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chrX:5825000-5825800	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
17	chrX:5825000-5826000	Genic enhancers	HUES6 Cell Line	embryonic stem cell
18	chrX:5825200-5826200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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