Variant report

Variant	rs7049300
Chromosome Location	chrX:5821786-5821787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chrX:5821597-5821913	Gliobla	brain:	n/a	n/a
2	POLR2A	chrX:5821426-5821788	MCF-7	breast:	n/a	n/a
3	MYC	chrX:5821785-5821806	MCF-7	breast:	n/a	n/a

Variant related genes	Relation type
NLGN4X	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11094874	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs3810687	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs5916269	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6529896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869027	chrX:5052974-6043003	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2830398	chrX:5618240-5882060	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv949393	chrX:5637763-5883977	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv817415	chrX:5803207-5833017	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:5792600-5821800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chrX:5799600-5828600	Weak transcription	Ovary	ovary
3	chrX:5806800-5833200	Strong transcription	Dnd41	blood
4	chrX:5810000-5823000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chrX:5810600-5823400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chrX:5817600-5825000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chrX:5818200-5822000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chrX:5818800-5827000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chrX:5819000-5822200	Strong transcription	H1 Cell Line	embryonic stem cell
10	chrX:5819000-5822600	Strong transcription	Fetal Thymus	thymus
11	chrX:5819200-5821800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chrX:5819200-5822000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chrX:5819200-5823000	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chrX:5819200-5825600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chrX:5820200-5822200	Strong transcription	H9 Cell Line	embryonic stem cell
16	chrX:5820400-5822000	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chrX:5820600-5822400	Weak transcription	Brain Angular Gyrus	brain
18	chrX:5821200-5822800	Weak transcription	Fetal Kidney	kidney
19	chrX:5821200-5823000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chrX:5821200-5823000	Weak transcription	Fetal Stomach	stomach
21	chrX:5821200-5823200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chrX:5821200-5823600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chrX:5821200-5823800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chrX:5821200-5825400	Weak transcription	Brain Germinal Matrix	brain
25	chrX:5821200-5828400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chrX:5821200-5831200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chrX:5821400-5823200	Weak transcription	Fetal Brain Female	brain
28	chrX:5821400-5823600	Weak transcription	Thymus	Thymus

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