Variant report

Variant	rs6532746
Chromosome Location	chr4:99467624-99467625
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99463140..99464695-chr4:99465921..99468144,2	K562	blood:
2	chr4:99465722..99468319-chr4:99566226..99568875,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10489125	0.82[JPT][hapmap]
rs10516433	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10516434	0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11945713	0.90[ASN][1000 genomes]
rs1554849	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17498778	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17499015	1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17564872	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17564998	0.90[ASN][1000 genomes]
rs4699645	0.90[ASN][1000 genomes]
rs4699654	0.82[JPT][hapmap]
rs56221164	0.90[ASN][1000 genomes]
rs59150136	0.90[ASN][1000 genomes]
rs60026821	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs60947018	0.95[ASN][1000 genomes]
rs6532740	1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6817773	0.86[ASN][1000 genomes]
rs6830136	0.90[ASN][1000 genomes]
rs6840239	0.95[ASN][1000 genomes]
rs6840610	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6846101	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853079	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7666585	0.82[JPT][hapmap]
rs7667273	0.82[JPT][hapmap]
rs7667608	0.90[ASN][1000 genomes]
rs7676155	0.90[ASN][1000 genomes]
rs7688849	0.90[ASN][1000 genomes]
rs7689116	0.90[ASN][1000 genomes]
rs7689289	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs9761395	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99450800-99468000	Weak transcription	HSMM	muscle
2	chr4:99459000-99468000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:99459200-99468000	Weak transcription	Esophagus	oesophagus
4	chr4:99459200-99479600	Weak transcription	Spleen	Spleen
5	chr4:99459600-99467800	Weak transcription	NHLF	lung
6	chr4:99463800-99478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:99464000-99468000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:99464800-99467800	Enhancers	Fetal Brain Female	brain
9	chr4:99464800-99468000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:99465000-99468400	Enhancers	Fetal Brain Male	brain
11	chr4:99465400-99467800	Enhancers	Brain Angular Gyrus	brain
12	chr4:99465400-99467800	Enhancers	Fetal Lung	lung
13	chr4:99465800-99467800	Weak transcription	Aorta	Aorta
14	chr4:99466200-99467800	Weak transcription	Fetal Heart	heart
15	chr4:99466400-99467800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr4:99466400-99467800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr4:99466400-99468000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:99466400-99468000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:99466400-99477000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:99466600-99468000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:99466600-99479800	Weak transcription	Fetal Thymus	thymus
22	chr4:99466800-99467800	Weak transcription	Left Ventricle	heart
23	chr4:99466800-99467800	Weak transcription	HUVEC	blood vessel
24	chr4:99466800-99501600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:99467200-99467800	Enhancers	Brain Germinal Matrix	brain
26	chr4:99467200-99467800	Enhancers	Brain Substantia Nigra	brain
27	chr4:99467200-99468000	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr4:99467400-99467800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:99467400-99467800	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr4:99467400-99467800	Enhancers	Muscle Satellite Cultured Cells	--
31	chr4:99467400-99467800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:99467400-99467800	Enhancers	Brain Anterior Caudate	brain
33	chr4:99467400-99467800	Enhancers	Brain Cingulate Gyrus	brain
34	chr4:99467400-99467800	Enhancers	Brain Hippocampus Middle	brain
35	chr4:99467400-99467800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr4:99467400-99467800	Enhancers	Ovary	ovary
37	chr4:99467400-99467800	Enhancers	Right Atrium	heart
38	chr4:99467400-99467800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr4:99467400-99467800	Enhancers	Osteobl	bone
40	chr4:99467400-99468000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:99467400-99468000	Enhancers	Fetal Muscle Leg	muscle
42	chr4:99467400-99468000	Enhancers	Fetal Stomach	stomach
43	chr4:99467400-99468200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr4:99467600-99467800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:99467600-99467800	Enhancers	Rectal Smooth Muscle	rectum
46	chr4:99467600-99467800	Enhancers	HMEC	breast
47	chr4:99467600-99467800	Enhancers	HSMMtube	muscle
48	chr4:99467600-99468000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr4:99467600-99468000	Flanking Active TSS	Colon Smooth Muscle	Colon
50	chr4:99467600-99468200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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