Variant report

Variant	rs6846101
Chromosome Location	chr4:99465442-99465443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99459317..99461488-chr4:99464335..99467316,2	K562	blood:
2	chr4:99460334..99463092-chr4:99464059..99466192,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10516433	0.90[ASN][1000 genomes]
rs10516434	0.90[ASN][1000 genomes]
rs11945713	0.90[ASN][1000 genomes]
rs1554849	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17498778	0.90[ASN][1000 genomes]
rs17499015	0.90[ASN][1000 genomes]
rs17564872	0.88[ASN][1000 genomes]
rs17564998	0.90[ASN][1000 genomes]
rs4699645	0.90[ASN][1000 genomes]
rs56221164	0.90[ASN][1000 genomes]
rs59150136	0.90[ASN][1000 genomes]
rs60026821	0.88[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs60947018	0.95[ASN][1000 genomes]
rs6532740	0.90[ASN][1000 genomes]
rs6532746	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817773	0.86[ASN][1000 genomes]
rs6830136	0.90[ASN][1000 genomes]
rs6840239	0.95[ASN][1000 genomes]
rs6840610	0.86[ASN][1000 genomes]
rs6853079	0.90[ASN][1000 genomes]
rs7667608	0.90[ASN][1000 genomes]
rs7676155	0.90[ASN][1000 genomes]
rs7688849	0.90[ASN][1000 genomes]
rs7689116	0.90[ASN][1000 genomes]
rs7689289	0.90[ASN][1000 genomes]
rs9761395	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99446000-99467400	Weak transcription	Fetal Stomach	stomach
2	chr4:99449800-99467400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr4:99450200-99467400	Weak transcription	Osteobl	bone
4	chr4:99450800-99468000	Weak transcription	HSMM	muscle
5	chr4:99459000-99468000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:99459200-99468000	Weak transcription	Esophagus	oesophagus
7	chr4:99459200-99479600	Weak transcription	Spleen	Spleen
8	chr4:99459600-99466000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:99459600-99467800	Weak transcription	NHLF	lung
10	chr4:99461000-99467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:99463400-99467600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:99463600-99467600	Weak transcription	HMEC	breast
13	chr4:99463800-99465600	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr4:99463800-99478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:99464000-99468000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:99464800-99467800	Enhancers	Fetal Brain Female	brain
17	chr4:99464800-99468000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr4:99465000-99466400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:99465000-99468400	Enhancers	Fetal Brain Male	brain
20	chr4:99465200-99466400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:99465200-99466400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:99465200-99466800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr4:99465400-99465600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:99465400-99465600	Enhancers	Ovary	ovary
25	chr4:99465400-99465800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr4:99465400-99466000	Enhancers	Brain Cingulate Gyrus	brain
27	chr4:99465400-99466200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr4:99465400-99466200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:99465400-99466200	Enhancers	Brain Anterior Caudate	brain
30	chr4:99465400-99466200	Enhancers	Fetal Heart	heart
31	chr4:99465400-99466400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr4:99465400-99466400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:99465400-99466400	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr4:99465400-99466400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr4:99465400-99466400	Enhancers	Brain Hippocampus Middle	brain
36	chr4:99465400-99466400	Enhancers	Fetal Muscle Leg	muscle
37	chr4:99465400-99466400	Enhancers	Thymus	Thymus
38	chr4:99465400-99466600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr4:99465400-99466600	Enhancers	Fetal Thymus	thymus
40	chr4:99465400-99466800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr4:99465400-99466800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr4:99465400-99466800	Enhancers	Brain Substantia Nigra	brain
43	chr4:99465400-99467000	Enhancers	Primary T helper cells fromperipheralblood	blood
44	chr4:99465400-99467600	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr4:99465400-99467800	Enhancers	Brain Angular Gyrus	brain
46	chr4:99465400-99467800	Enhancers	Fetal Lung	lung

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