Variant report

Variant	rs6532836
Chromosome Location	chr4:100840689-100840690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100837896..100840734-chr4:100841683..100843412,2	MCF-7	breast:
2	chr4:100840471..100849591-chr4:100866268..100873122,18	K562	blood:
3	chr4:100768566..100770766-chr4:100839767..100842129,2	K562	blood:
4	chr4:100834943..100837070-chr4:100838734..100840986,2	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000164031	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10026048	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11732776	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11935024	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11935399	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1365492	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs17029583	0.83[AFR][1000 genomes]
rs1896166	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1961323	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2098937	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2114442	0.94[ASN][1000 genomes]
rs2298735	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28404345	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2866174	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2866180	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28706589	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3756087	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3775511	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs60978748	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6532835	0.93[ASN][1000 genomes]
rs6811559	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6848337	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6849599	0.84[AFR][1000 genomes]
rs6854536	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7675947	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7676564	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7684872	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7686428	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7689566	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7692416	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs919132	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs919133	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9307242	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6532836	DAPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:100816000-100867000	Weak transcription	Lung	lung
3	chr4:100816200-100842200	Weak transcription	Pancreas	Pancrea
4	chr4:100816200-100851400	Weak transcription	A549	lung
5	chr4:100816200-100851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:100816200-100853600	Weak transcription	NHLF	lung
7	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:100816400-100845800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:100816600-100841800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr4:100816600-100843800	Weak transcription	Right Ventricle	heart
11	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
12	chr4:100823600-100845600	Weak transcription	Hela-S3	cervix
13	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
14	chr4:100824400-100847000	Weak transcription	Brain Angular Gyrus	brain
15	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:100824800-100854200	Weak transcription	Brain Anterior Caudate	brain
17	chr4:100826200-100844000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr4:100827600-100856400	Weak transcription	Brain Substantia Nigra	brain
19	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
20	chr4:100829200-100856400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr4:100829200-100866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:100829400-100852600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:100829400-100856200	Weak transcription	HepG2	liver
24	chr4:100829600-100866200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr4:100836000-100842600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr4:100836200-100846600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:100836600-100856800	Weak transcription	Spleen	Spleen
28	chr4:100836800-100847400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr4:100836800-100851800	Strong transcription	Dnd41	blood
30	chr4:100837600-100842000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr4:100837600-100852600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr4:100838200-100840800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:100838200-100850200	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr4:100838400-100840800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr4:100838400-100840800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr4:100838400-100841000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:100838400-100842600	Strong transcription	HUVEC	blood vessel
38	chr4:100838400-100847800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:100838400-100847800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:100838400-100850000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:100838400-100852000	Strong transcription	Fetal Thymus	thymus
42	chr4:100838600-100841000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr4:100838600-100843400	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr4:100838800-100841200	ZNF genes & repeats	GM12878-XiMat	blood
45	chr4:100839000-100852200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:100839200-100843200	Weak transcription	Brain Hippocampus Middle	brain
47	chr4:100839200-100843400	Weak transcription	NHDF-Ad	bronchial
48	chr4:100839200-100844600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr4:100839200-100855600	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:100839200-100857400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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