Variant report

Variant	rs1961323
Chromosome Location	chr4:100776127-100776128
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100774290..100777114-chr4:100784977..100787156,4	K562	blood:
2	chr4:100763005..100767706-chr4:100772545..100776617,4	K562	blood:
3	chr4:100774002..100776880-chr4:100781292..100784858,3	MCF-7	breast:
4	chr4:100775816..100777522-chr4:100778247..100781362,3	K562	blood:
5	chr4:100763005..100766209-chr4:100774032..100776506,3	K562	blood:
6	chr4:100775383..100776949-chr4:100866308..100868457,2	K562	blood:
7	chr4:100774832..100777251-chr4:100779368..100781085,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164031	Chromatin interaction
ENSG00000070190	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10026048	0.88[ASN][1000 genomes]
rs11097676	0.95[JPT][hapmap]
rs11097677	0.95[JPT][hapmap]
rs11732776	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11935024	0.85[ASN][1000 genomes]
rs11935399	0.84[ASN][1000 genomes]
rs1365491	0.95[JPT][hapmap]
rs1365492	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1365495	0.91[JPT][hapmap]
rs17029563	0.95[JPT][hapmap]
rs17029583	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1863608	0.91[JPT][hapmap]
rs1896166	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1972698	0.95[JPT][hapmap]
rs2098937	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2114442	0.91[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2162386	0.81[CEU][hapmap]
rs2282588	0.91[JPT][hapmap]
rs2298735	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs28404345	0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2866174	0.95[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2866180	0.85[ASN][1000 genomes]
rs28679452	0.88[ASN][1000 genomes]
rs28706589	0.85[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3756087	0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs3775499	0.81[CEU][hapmap];0.95[JPT][hapmap]
rs3775500	0.95[JPT][hapmap]
rs3775501	0.95[JPT][hapmap]
rs3775511	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3822103	0.81[CEU][hapmap]
rs4699764	0.86[JPT][hapmap]
rs4699765	0.91[JPT][hapmap]
rs60978748	0.87[ASN][1000 genomes]
rs6532833	0.95[JPT][hapmap]
rs6532835	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6532836	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6811559	0.85[ASN][1000 genomes]
rs6814895	0.95[JPT][hapmap]
rs6848337	0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6849599	0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6854536	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs715239	0.91[JPT][hapmap]
rs7675947	0.82[ASN][1000 genomes]
rs7676564	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7684872	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7686428	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7689566	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7692416	0.82[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs919132	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs919133	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307242	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1961323	DAPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100760200-100777000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:100760200-100777200	Weak transcription	Fetal Thymus	thymus
3	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:100764000-100776800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:100767600-100776800	Weak transcription	HMEC	breast
6	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:100768800-100776800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:100769000-100777400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr4:100769000-100777800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr4:100769800-100776800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:100772600-100776600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr4:100772600-100777600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:100773400-100776600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:100773600-100776600	Strong transcription	NHEK	skin
15	chr4:100773600-100776800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:100773800-100776400	Genic enhancers	GM12878-XiMat	blood
17	chr4:100773800-100776600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:100774000-100776200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:100774400-100776200	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr4:100774400-100777400	Weak transcription	K562	blood
21	chr4:100774400-100777600	Weak transcription	Fetal Lung	lung
22	chr4:100774800-100776200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:100775200-100776200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
24	chr4:100775400-100776200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr4:100775600-100776400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
26	chr4:100775600-100776800	Strong transcription	Primary T cells from cord blood	blood
27	chr4:100775600-100776800	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr4:100775600-100778000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:100775600-100778000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr4:100775600-100778600	Genic enhancers	Primary B cells from peripheral blood	blood
31	chr4:100775800-100776200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr4:100775800-100776200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:100775800-100776600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
34	chr4:100775800-100777000	Genic enhancers	Primary B cells from cord blood	blood
35	chr4:100775800-100780800	Weak transcription	Esophagus	oesophagus
36	chr4:100776000-100776200	Enhancers	Sigmoid Colon	Sigmoid Colon
37	chr4:100776000-100776800	Enhancers	Primary hematopoietic stem cells	blood
38	chr4:100776000-100776800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr4:100776000-100777200	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr4:100776000-100777600	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr4:100776000-100777600	Enhancers	Thymus	Thymus

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