Variant report

Variant	rs1365491
Chromosome Location	chr4:100747254-100747255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100745459..100748215-chr4:100790977..100792734,2	MCF-7	breast:
2	chr4:100745615..100747707-chr4:100749417..100751608,2	K562	blood:
3	chr4:100745222..100748703-chr4:100869288..100872836,3	K562	blood:
4	chr4:100745759..100748161-chr4:100844127..100845854,2	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1044044	0.84[CEU][hapmap]
rs10516458	0.85[CEU][hapmap]
rs11097676	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11097677	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11097678	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097681	0.85[CEU][hapmap]
rs11732776	0.95[JPT][hapmap]
rs11736218	0.85[CEU][hapmap]
rs11932783	0.85[CEU][hapmap]
rs11935458	0.90[CEU][hapmap]
rs11935615	0.90[CEU][hapmap]
rs11937985	0.85[CEU][hapmap]
rs11941799	0.84[ASW][hapmap];0.90[CEU][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]
rs11944405	0.85[CEU][hapmap]
rs11944656	0.90[CEU][hapmap]
rs11945303	0.85[CEU][hapmap]
rs11947295	0.85[CEU][hapmap]
rs1365492	0.82[CHD][hapmap];0.95[JPT][hapmap]
rs1365495	0.91[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.96[ASN][1000 genomes]
rs1426735	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1465519	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17029552	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029563	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs17029573	0.95[CEU][hapmap];0.86[GIH][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs17029583	0.84[ASN][1000 genomes]
rs17029673	0.85[CEU][hapmap]
rs1863608	0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs1896166	0.95[JPT][hapmap]
rs1961323	0.95[JPT][hapmap]
rs1972698	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2017707	0.84[CEU][hapmap]
rs2081626	0.85[CEU][hapmap]
rs2114442	0.95[JPT][hapmap]
rs2276939	0.85[CEU][hapmap]
rs2282588	0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.97[ASN][1000 genomes]
rs2298735	0.95[JPT][hapmap]
rs2866174	0.91[JPT][hapmap]
rs28679452	0.81[ASN][1000 genomes]
rs3733463	0.95[CEU][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs3737484	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs3756087	0.95[JPT][hapmap]
rs3775499	0.91[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs3775500	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775501	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4699764	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.98[ASN][1000 genomes]
rs4699765	0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs55973331	0.85[EUR][1000 genomes]
rs56174126	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57798058	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs58391911	0.84[EUR][1000 genomes]
rs58534089	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6532833	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6532834	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs6532835	0.95[JPT][hapmap]
rs6813099	0.89[ASW][hapmap];0.95[CEU][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6814181	0.83[ASW][hapmap];0.95[CEU][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6814895	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6817649	0.85[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs6829912	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs6832726	0.85[CEU][hapmap]
rs6848337	0.95[JPT][hapmap]
rs6848666	0.90[CEU][hapmap];0.83[GIH][hapmap];0.81[TSI][hapmap]
rs6849599	0.90[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6852487	0.81[CEU][hapmap]
rs6854536	0.95[JPT][hapmap]
rs715239	0.91[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.97[ASN][1000 genomes]
rs7666640	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7676564	0.95[JPT][hapmap]
rs7684872	0.95[JPT][hapmap]
rs7686428	0.95[JPT][hapmap]
rs7686565	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs7687842	1.00[ASN][1000 genomes]
rs7688733	0.99[ASN][1000 genomes]
rs7688737	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7689566	0.95[JPT][hapmap]
rs7692416	0.95[JPT][hapmap]
rs7697357	0.83[EUR][1000 genomes]
rs7698065	0.99[ASN][1000 genomes]
rs919132	0.82[CHD][hapmap];0.95[JPT][hapmap]
rs919133	0.82[CHD][hapmap];0.95[JPT][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1365491	DNAJB14	cis	parietal	SCAN
rs1365491	MAPKSP1	cis	parietal	SCAN
rs1365491	MAPKSP1	cis	cerebellum	SCAN
rs1365491	RAP1GDS1	cis	parietal	SCAN

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100740000-100756600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr4:100741400-100756800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:100741400-100758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:100742800-100756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr4:100743000-100749400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr4:100743600-100756400	Weak transcription	Primary T cells from cord blood	blood
7	chr4:100743600-100758000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:100743800-100756800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr4:100744000-100757200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:100744200-100756400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:100744200-100756600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:100744200-100756600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:100744200-100757400	Weak transcription	Spleen	Spleen
14	chr4:100744400-100756600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:100744800-100748400	Genic enhancers	NHEK	skin
16	chr4:100745000-100747400	Genic enhancers	Primary B cells from cord blood	blood
17	chr4:100745000-100755800	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:100745000-100756600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:100745000-100759400	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:100745200-100749400	Genic enhancers	Primary B cells from peripheral blood	blood
21	chr4:100745400-100748000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:100745400-100749400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr4:100745400-100765200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr4:100745600-100747400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr4:100746000-100748200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:100746200-100750800	Enhancers	HMEC	breast
27	chr4:100746200-100756600	Weak transcription	Esophagus	oesophagus
28	chr4:100746400-100748600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr4:100746400-100750200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr4:100746400-100753200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:100746400-100753200	Weak transcription	Aorta	Aorta
32	chr4:100746400-100759800	Weak transcription	Placenta	Placenta
33	chr4:100746800-100748800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr4:100747000-100765400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr4:100747200-100747600	Weak transcription	GM12878-XiMat	blood
36	chr4:100747200-100750200	Enhancers	Primary T helper cells PMA-I stimulated	--

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