Variant report

Variant	rs6532834
Chromosome Location	chr4:100790328-100790329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100789002..100791414-chr4:100798253..100799959,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1044044	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10516458	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097676	0.89[ASW][hapmap];0.81[CEU][hapmap];0.81[TSI][hapmap]
rs11097679	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097680	1.00[ASW][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097681	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097682	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097683	0.94[ASN][1000 genomes]
rs11097685	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11097686	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11723286	1.00[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736218	0.94[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11736750	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11931053	1.00[ASW][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11931551	0.92[ASN][1000 genomes]
rs11932783	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11935458	0.90[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11935615	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11936309	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11936580	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11937985	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938952	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11939538	0.84[ASW][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11941520	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11941799	0.94[ASW][hapmap];0.90[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11944405	0.94[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944656	0.90[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11945303	0.94[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947295	0.86[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1365491	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs1465518	0.92[JPT][hapmap]
rs1465519	0.84[CEU][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes]
rs17029573	0.89[ASW][hapmap];0.86[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.84[LWK][hapmap];0.99[MKK][hapmap];0.94[TSI][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17029662	0.84[ASW][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17029673	0.94[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17029724	0.91[ASN][1000 genomes]
rs2017707	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2070738	0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2081626	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2081627	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2162386	0.92[JPT][hapmap]
rs2276939	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2866179	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34453741	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3733463	0.89[ASW][hapmap];0.86[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs3737484	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775500	0.89[ASW][hapmap];0.81[CEU][hapmap];0.81[TSI][hapmap]
rs3775501	0.89[ASW][hapmap];0.81[CEU][hapmap];0.81[TSI][hapmap]
rs3775512	0.84[JPT][hapmap]
rs3822103	0.92[JPT][hapmap]
rs4320141	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4536938	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs5015717	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs55726736	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55797991	0.88[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs55888547	0.91[ASN][1000 genomes]
rs55973331	0.84[EUR][1000 genomes]
rs56007968	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56140620	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57322716	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57798058	0.86[EUR][1000 genomes]
rs58304154	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58391911	0.88[EUR][1000 genomes]
rs58534089	0.86[EUR][1000 genomes]
rs60070547	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61191235	0.82[ASN][1000 genomes]
rs61203457	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62305038	0.91[ASN][1000 genomes]
rs62306101	0.93[ASN][1000 genomes]
rs6532837	0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6532839	0.91[ASN][1000 genomes]
rs6532840	0.91[ASN][1000 genomes]
rs6813099	0.89[ASW][hapmap];0.86[CEU][hapmap];0.88[GIH][hapmap];0.85[LWK][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes]
rs6814140	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6814181	0.94[ASW][hapmap];0.86[CEU][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes]
rs6816635	0.94[ASW][hapmap];0.88[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.84[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6817649	0.86[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs6824513	0.93[ASN][1000 genomes]
rs6829912	1.00[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831193	0.92[ASN][1000 genomes]
rs6832726	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6838495	0.91[ASN][1000 genomes]
rs6842840	0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6843247	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6845556	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6848666	0.90[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72686215	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs732386	0.91[ASN][1000 genomes]
rs73832925	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7660185	0.93[ASN][1000 genomes]
rs7666156	0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7666640	0.86[EUR][1000 genomes]
rs7686565	0.86[CEU][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes]
rs7688737	0.87[EUR][1000 genomes]
rs7697357	0.81[EUR][1000 genomes]
rs890486	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6532834	MAPKSP1	cis	parietal	SCAN
rs6532834	MAPKSP1	cis	cerebellum	SCAN
rs6532834	DNAJB14	cis	parietal	SCAN
rs6532834	MTTP	cis	lymphoblastoid	seeQTL
rs6532834	NFKB1	cis	cerebellum	SCAN

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:100777600-100800800	Weak transcription	Thymus	Thymus
4	chr4:100777800-100799200	Weak transcription	Fetal Thymus	thymus
5	chr4:100777800-100801000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:100778000-100792000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:100778000-100798600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:100778000-100800200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:100778200-100798200	Weak transcription	Placenta	Placenta
10	chr4:100778400-100800600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr4:100781200-100791800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:100781200-100800800	Weak transcription	Esophagus	oesophagus
13	chr4:100781200-100800800	Weak transcription	Spleen	Spleen
14	chr4:100781200-100801000	Weak transcription	Pancreas	Pancrea
15	chr4:100781400-100795800	Strong transcription	Primary B cells from cord blood	blood
16	chr4:100782600-100790800	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr4:100782800-100792200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:100782800-100793400	Strong transcription	GM12878-XiMat	blood
19	chr4:100783000-100791000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:100783000-100793400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr4:100783000-100793600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr4:100783000-100796000	Strong transcription	Primary B cells from peripheral blood	blood
23	chr4:100783200-100793000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:100783400-100790600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:100784400-100793000	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr4:100784800-100790400	Strong transcription	Primary hematopoietic stem cells	blood
27	chr4:100784800-100790400	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr4:100784800-100792600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:100785000-100790400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr4:100785800-100790400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr4:100786400-100798000	Weak transcription	Liver	Liver
32	chr4:100787200-100790600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr4:100787400-100790800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:100787800-100797800	Weak transcription	Fetal Lung	lung
35	chr4:100788200-100797800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:100788800-100799600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr4:100789000-100790400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:100789000-100793200	Strong transcription	NHEK	skin
39	chr4:100789400-100790600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr4:100789600-100790400	Enhancers	ES-I3 Cell Line	embryonic stem cell
41	chr4:100789600-100799400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:100789600-100799600	Weak transcription	Left Ventricle	heart
43	chr4:100789600-100799600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:100789600-100799600	Weak transcription	NH-A	brain
45	chr4:100789600-100800200	Weak transcription	NHLF	lung
46	chr4:100789600-100800600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr4:100789600-100805200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:100789600-100814200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:100789800-100796000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:100789800-100797600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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