Variant report

Variant	rs11935615
Chromosome Location	chr4:100773750-100773751
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100763005..100767706-chr4:100772545..100776617,4	K562	blood:
2	chr4:100771730..100775423-chr4:100868763..100871713,3	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1044044	0.95[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10516458	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11097676	0.90[CEU][hapmap]
rs11097679	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097680	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11097681	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11097682	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11097683	0.85[ASN][1000 genomes]
rs11097685	0.82[ASN][1000 genomes]
rs11097686	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11723286	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11736218	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11736750	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11931053	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11931551	0.83[ASN][1000 genomes]
rs11932783	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11935458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936309	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11936580	0.84[ASN][1000 genomes]
rs11937985	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11938952	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11939538	0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11941520	1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11941799	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944405	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11944656	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11945303	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11947295	0.95[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1365491	0.90[CEU][hapmap]
rs1465518	0.92[JPT][hapmap]
rs1465519	0.94[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes]
rs17029573	0.95[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029662	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17029673	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17029724	0.82[ASN][1000 genomes]
rs2017707	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2070738	0.81[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2081626	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2081627	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2162386	0.92[JPT][hapmap]
rs2276939	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2866179	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs34453741	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3733463	0.95[CEU][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes]
rs3737484	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3775500	0.90[CEU][hapmap]
rs3775501	0.90[CEU][hapmap]
rs3775512	0.84[JPT][hapmap]
rs3822103	0.92[JPT][hapmap]
rs4320141	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4536938	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs5015717	0.82[ASN][1000 genomes]
rs55726736	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55797991	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs55888547	0.82[ASN][1000 genomes]
rs55973331	0.89[EUR][1000 genomes]
rs56007968	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs56140620	0.82[ASN][1000 genomes]
rs57322716	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57798058	0.90[EUR][1000 genomes]
rs58304154	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58391911	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58534089	0.90[EUR][1000 genomes]
rs60070547	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs61203457	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62305038	1.00[ASN][1000 genomes]
rs62306101	0.84[ASN][1000 genomes]
rs6532834	0.90[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532837	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6532839	0.82[ASN][1000 genomes]
rs6532840	0.82[ASN][1000 genomes]
rs6813099	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6814140	0.83[ASN][1000 genomes]
rs6814181	0.95[CEU][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes]
rs6816635	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6817649	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs6824513	0.84[ASN][1000 genomes]
rs6829912	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6831193	0.83[ASN][1000 genomes]
rs6832726	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6838495	0.82[ASN][1000 genomes]
rs6842840	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs6843247	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6845556	1.00[JPT][hapmap]
rs6848666	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852487	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs72686215	0.84[ASN][1000 genomes]
rs732386	0.82[ASN][1000 genomes]
rs73832925	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7660185	0.84[ASN][1000 genomes]
rs7666156	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7666640	0.90[EUR][1000 genomes]
rs7686565	0.95[CEU][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7688737	0.92[EUR][1000 genomes]
rs7697357	0.86[EUR][1000 genomes]
rs890486	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100755400-100776000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:100760200-100777000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:100760200-100777200	Weak transcription	Fetal Thymus	thymus
4	chr4:100761000-100801200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:100763000-100775600	Weak transcription	Esophagus	oesophagus
6	chr4:100764000-100776800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:100767600-100776800	Weak transcription	HMEC	breast
8	chr4:100768400-100799000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:100768600-100774800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:100768800-100774000	Weak transcription	Primary B cells from cord blood	blood
11	chr4:100768800-100776800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:100769000-100773800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr4:100769000-100775200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:100769000-100775400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr4:100769000-100775600	Weak transcription	Primary T cells from cord blood	blood
16	chr4:100769000-100777400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:100769000-100777800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:100769800-100776800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:100770800-100774200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:100771200-100774000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:100771200-100775400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:100772000-100773800	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr4:100772000-100774000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr4:100772200-100774200	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr4:100772600-100773800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr4:100772600-100774400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:100772600-100774400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr4:100772600-100774400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr4:100772600-100775800	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr4:100772600-100776600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr4:100772600-100777600	Weak transcription	Duodenum Mucosa	Duodenum
32	chr4:100773000-100773800	Flanking Active TSS	GM12878-XiMat	blood
33	chr4:100773000-100774200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:100773000-100774400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr4:100773400-100775600	Genic enhancers	Monocytes-CD14+_RO01746	blood
36	chr4:100773400-100776600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:100773600-100774400	Enhancers	Fetal Lung	lung
38	chr4:100773600-100774400	Enhancers	K562	blood
39	chr4:100773600-100776600	Strong transcription	NHEK	skin
40	chr4:100773600-100776800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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