Variant report

Variant	rs6832726
Chromosome Location	chr4:100838410-100838411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100837131..100839848-chr4:100866356..100868236,2	K562	blood:
2	chr4:100837896..100840734-chr4:100841683..100843412,2	MCF-7	breast:
3	chr4:100832439..100834484-chr4:100837119..100838825,2	MCF-7	breast:
4	chr4:100829396..100833198-chr4:100836822..100839868,3	MCF-7	breast:
5	chr4:100837674..100840166-chr4:100869128..100872455,4	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1044044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097676	0.85[CEU][hapmap]
rs11097679	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097682	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097683	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11097685	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097686	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11723286	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11736218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11736750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11931053	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931551	0.95[ASN][1000 genomes]
rs11932783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11935458	0.95[CEU][hapmap];0.92[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11935615	0.95[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11936309	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11936580	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11937985	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11938952	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939538	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941520	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11941799	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11942532	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs11944405	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11944656	0.95[CEU][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11945303	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11947295	0.91[CEU][hapmap];0.97[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11947412	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs1365491	0.85[CEU][hapmap]
rs1465518	0.92[JPT][hapmap]
rs1465519	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs17029573	0.90[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17029662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17029724	0.89[ASN][1000 genomes]
rs2017707	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2070738	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2081626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081627	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162386	0.92[JPT][hapmap]
rs2276939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866179	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34453741	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3733463	0.90[CEU][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap]
rs3737484	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775500	0.85[CEU][hapmap]
rs3775501	0.85[CEU][hapmap]
rs3775512	0.84[JPT][hapmap]
rs3822103	0.92[JPT][hapmap]
rs4320141	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4536938	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs5015717	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55726736	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55797991	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs55888547	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56007968	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56140620	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57322716	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58304154	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60070547	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61191235	0.81[ASN][1000 genomes]
rs61203457	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62305038	0.87[ASN][1000 genomes]
rs62306101	0.92[ASN][1000 genomes]
rs6532834	0.95[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6532837	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6532839	0.89[ASN][1000 genomes]
rs6532840	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6813099	0.90[CEU][hapmap]
rs6814140	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6814181	0.90[CEU][hapmap];0.86[JPT][hapmap]
rs6816635	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6817649	0.90[CEU][hapmap]
rs6824513	0.92[ASN][1000 genomes]
rs6829912	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6831193	0.95[ASN][1000 genomes]
rs6838495	0.94[ASN][1000 genomes]
rs6842840	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6843247	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6845556	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6848666	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72686215	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs732386	0.94[ASN][1000 genomes]
rs73832925	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7660185	0.92[ASN][1000 genomes]
rs7666156	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7666192	0.80[ASN][1000 genomes]
rs7686565	0.91[CEU][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap]
rs7687287	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs890486	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100815600-100840000	Weak transcription	Small Intestine	intestine
2	chr4:100816000-100839800	Weak transcription	Esophagus	oesophagus
3	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:100816000-100867000	Weak transcription	Lung	lung
5	chr4:100816200-100838800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:100816200-100839800	Weak transcription	Aorta	Aorta
7	chr4:100816200-100840200	Weak transcription	Colonic Mucosa	Colon
8	chr4:100816200-100842200	Weak transcription	Pancreas	Pancrea
9	chr4:100816200-100851400	Weak transcription	A549	lung
10	chr4:100816200-100851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr4:100816200-100853600	Weak transcription	NHLF	lung
12	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:100816400-100845800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr4:100816600-100839600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr4:100816600-100839800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr4:100816600-100841800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:100816600-100843800	Weak transcription	Right Ventricle	heart
18	chr4:100819000-100838600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:100819600-100839800	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
21	chr4:100823600-100845600	Weak transcription	Hela-S3	cervix
22	chr4:100823800-100838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr4:100823800-100839800	Weak transcription	Ovary	ovary
24	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
25	chr4:100824400-100847000	Weak transcription	Brain Angular Gyrus	brain
26	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr4:100824600-100838600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr4:100824800-100854200	Weak transcription	Brain Anterior Caudate	brain
29	chr4:100825400-100838600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr4:100826200-100844000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:100827600-100839400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:100827600-100856400	Weak transcription	Brain Substantia Nigra	brain
33	chr4:100827800-100838600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:100827800-100838600	Weak transcription	Fetal Brain Male	brain
35	chr4:100827800-100838600	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:100827800-100839800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
38	chr4:100829200-100838600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr4:100829200-100838600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:100829200-100838600	Weak transcription	Fetal Intestine Large	intestine
41	chr4:100829200-100838600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr4:100829200-100838600	Weak transcription	NHEK	skin
43	chr4:100829200-100838800	Weak transcription	Fetal Kidney	kidney
44	chr4:100829200-100838800	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr4:100829200-100856400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:100829200-100866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:100829400-100838600	Weak transcription	Osteobl	bone
48	chr4:100829400-100839800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr4:100829400-100852600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr4:100829400-100856200	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links