Variant report

Variant	rs6824513
Chromosome Location	chr4:100958719-100958720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DAPP1-2	chr4:100958685-100958799	ENSG00000245322.2
2	lnc-DAPP1-2	chr4:100958685-100958977	ENSG00000245322.2
3	lnc-DAPP1-2	chr4:100958685-100958862	ENSG00000245322.2

Extended variants
information (count: 117 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1044044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs10516458	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11097679	0.93[ASN][1000 genomes]
rs11097680	0.88[ASN][1000 genomes]
rs11097681	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11097682	0.92[ASN][1000 genomes]
rs11097683	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097685	0.98[ASN][1000 genomes]
rs11097686	0.99[ASN][1000 genomes]
rs11723286	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11732776	0.89[CEU][hapmap]
rs11736218	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11736750	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11931053	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11931551	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11932783	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11935024	0.81[AFR][1000 genomes]
rs11935458	0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs11935615	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11936309	0.94[ASN][1000 genomes]
rs11936580	0.95[ASN][1000 genomes]
rs11937848	0.80[ASN][1000 genomes]
rs11937985	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11938952	0.94[ASN][1000 genomes]
rs11939538	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11941520	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs11941799	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11942532	0.88[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs11944405	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11944656	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11945303	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11947295	0.84[ASN][1000 genomes]
rs11947412	0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs17029573	0.81[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes]
rs17029662	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17029673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17029724	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1896166	0.89[CEU][hapmap]
rs2017707	0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2070738	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2081627	0.92[ASN][1000 genomes]
rs2276939	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2298735	0.85[CEU][hapmap]
rs2866174	0.85[CEU][hapmap]
rs2866179	0.98[ASN][1000 genomes]
rs34453741	0.90[ASN][1000 genomes]
rs36109329	0.80[ASN][1000 genomes]
rs3737484	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3756087	0.89[CEU][hapmap]
rs3775512	0.84[JPT][hapmap]
rs4320141	0.98[ASN][1000 genomes]
rs4343735	0.81[ASN][1000 genomes]
rs4492010	0.80[ASN][1000 genomes]
rs4536938	0.84[ASN][1000 genomes]
rs5015717	0.94[ASN][1000 genomes]
rs55726736	0.92[ASN][1000 genomes]
rs55797991	0.83[ASN][1000 genomes]
rs55888547	0.98[ASN][1000 genomes]
rs56007968	0.98[ASN][1000 genomes]
rs56140620	0.98[ASN][1000 genomes]
rs56159765	0.80[ASN][1000 genomes]
rs56311063	0.80[ASN][1000 genomes]
rs57315614	0.80[ASN][1000 genomes]
rs57322716	0.96[ASN][1000 genomes]
rs58304154	0.84[ASN][1000 genomes]
rs58385517	0.80[ASN][1000 genomes]
rs60070547	0.98[ASN][1000 genomes]
rs61191235	0.88[ASN][1000 genomes]
rs61203457	0.94[ASN][1000 genomes]
rs61351569	0.80[ASN][1000 genomes]
rs62305038	0.84[ASN][1000 genomes]
rs62306101	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532834	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6532837	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6532839	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532840	0.98[ASN][1000 genomes]
rs6532841	0.80[ASN][1000 genomes]
rs6532842	0.80[ASN][1000 genomes]
rs66903712	0.80[ASN][1000 genomes]
rs67594720	0.80[ASN][1000 genomes]
rs6813794	0.80[ASN][1000 genomes]
rs6814140	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6816635	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6825579	0.80[ASN][1000 genomes]
rs6829912	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6830286	0.80[ASN][1000 genomes]
rs6831193	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6832726	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6838495	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6842840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs6843247	0.96[ASN][1000 genomes]
rs6845556	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6848666	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs6854536	0.89[CEU][hapmap]
rs72686215	1.00[ASN][1000 genomes]
rs732386	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7340772	0.80[ASN][1000 genomes]
rs7340886	0.80[ASN][1000 genomes]
rs73832925	0.94[ASN][1000 genomes]
rs7660185	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660479	0.80[ASN][1000 genomes]
rs7662195	0.80[ASN][1000 genomes]
rs7665301	0.80[ASN][1000 genomes]
rs7666156	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7666192	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7668076	0.80[ASN][1000 genomes]
rs7676564	0.89[CEU][hapmap]
rs7676597	0.80[ASN][1000 genomes]
rs7686428	0.89[CEU][hapmap]
rs7687287	0.83[CHB][hapmap];0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs7689566	0.89[CEU][hapmap]
rs7692416	0.89[CEU][hapmap];0.81[AFR][1000 genomes]
rs890486	0.93[ASN][1000 genomes]
rs9307242	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000173	chr4:100928002-100964404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6824513	DAPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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