Variant report

Variant	rs11097681
Chromosome Location	chr4:100852921-100852922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100850716..100855335-chr4:100865818..100872882,15	K562	blood:
2	chr4:100851997..100854259-chr4:100861223..100863842,2	K562	blood:
3	chr4:100814281..100816576-chr4:100852313..100854892,3	K562	blood:
4	chr4:100848205..100853069-chr4:100866591..100869335,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction
ENSG00000109270	Chromatin interaction
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1044044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097676	0.85[CEU][hapmap]
rs11097679	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097680	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097682	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097683	0.98[ASN][1000 genomes]
rs11097685	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097686	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11723286	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11736218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11736750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11931053	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931551	0.95[ASN][1000 genomes]
rs11932783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11935458	0.95[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11935615	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11936309	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11936580	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11937985	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11938952	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939538	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11941520	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11941799	0.95[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11942532	0.87[CHB][hapmap];0.83[JPT][hapmap]
rs11944405	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11944656	0.95[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11945303	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11947295	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11947412	0.80[CHB][hapmap]
rs1365491	0.85[CEU][hapmap]
rs1465518	0.92[JPT][hapmap]
rs1465519	0.89[CEU][hapmap];0.91[JPT][hapmap]
rs17029573	0.90[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17029662	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17029724	0.89[ASN][1000 genomes]
rs2017707	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2070738	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2081626	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081627	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162386	0.92[JPT][hapmap]
rs2276939	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2866179	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34453741	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3733463	0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.80[TSI][hapmap]
rs3737484	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3775500	0.85[CEU][hapmap]
rs3775501	0.85[CEU][hapmap]
rs3775512	0.83[JPT][hapmap]
rs3822103	0.92[JPT][hapmap]
rs4320141	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4536938	0.87[ASN][1000 genomes]
rs5015717	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55726736	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55797991	0.86[ASN][1000 genomes]
rs55888547	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56007968	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56140620	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57322716	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58304154	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60070547	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61191235	0.81[ASN][1000 genomes]
rs61203457	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62305038	0.87[ASN][1000 genomes]
rs62306101	0.92[ASN][1000 genomes]
rs6532834	0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6532837	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6532839	0.89[ASN][1000 genomes]
rs6532840	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6813099	0.90[CEU][hapmap];0.88[GIH][hapmap]
rs6814140	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6814181	0.90[CEU][hapmap];0.81[GIH][hapmap];0.85[JPT][hapmap]
rs6816635	0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6817649	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs6824513	0.92[ASN][1000 genomes]
rs6829912	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6831193	0.95[ASN][1000 genomes]
rs6832726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6838495	0.94[ASN][1000 genomes]
rs6842840	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6843247	1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6845556	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6848666	1.00[ASW][hapmap];0.95[CEU][hapmap];0.81[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72686215	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs732386	0.94[ASN][1000 genomes]
rs73832925	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7660185	0.92[ASN][1000 genomes]
rs7666156	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7666192	0.80[ASN][1000 genomes]
rs7686565	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs7687287	0.81[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap]
rs890486	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv879662	chr4:100849466-100876648	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:100816000-100867000	Weak transcription	Lung	lung
3	chr4:100816200-100853600	Weak transcription	NHLF	lung
4	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
6	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
7	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:100824800-100854200	Weak transcription	Brain Anterior Caudate	brain
9	chr4:100827600-100856400	Weak transcription	Brain Substantia Nigra	brain
10	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
11	chr4:100829200-100856400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:100829200-100866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:100829400-100856200	Weak transcription	HepG2	liver
14	chr4:100829600-100866200	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr4:100836600-100856800	Weak transcription	Spleen	Spleen
16	chr4:100839200-100855600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:100839200-100857400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:100840000-100862600	Weak transcription	K562	blood
19	chr4:100840200-100854000	Weak transcription	Brain Germinal Matrix	brain
20	chr4:100840200-100864600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr4:100840200-100865800	Weak transcription	Ovary	ovary
22	chr4:100840200-100866000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:100840200-100867000	Weak transcription	Gastric	stomach
24	chr4:100840400-100855000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:100840400-100855200	Weak transcription	Colon Smooth Muscle	Colon
26	chr4:100840400-100856400	Weak transcription	Fetal Kidney	kidney
27	chr4:100840400-100856400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:100840400-100856800	Weak transcription	Thymus	Thymus
29	chr4:100840400-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:100840400-100866800	Weak transcription	Aorta	Aorta
31	chr4:100840400-100867000	Weak transcription	Esophagus	oesophagus
32	chr4:100840600-100862200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr4:100840800-100854600	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:100840800-100854800	Weak transcription	Fetal Lung	lung
35	chr4:100840800-100855600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:100840800-100858200	Weak transcription	Fetal Stomach	stomach
37	chr4:100842600-100853800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr4:100843400-100856200	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr4:100844200-100856400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr4:100844800-100856400	Weak transcription	NH-A	brain
41	chr4:100846000-100854000	Weak transcription	NHDF-Ad	bronchial
42	chr4:100847600-100856400	Weak transcription	Brain Angular Gyrus	brain
43	chr4:100847800-100856400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:100847800-100864600	Weak transcription	Hela-S3	cervix
45	chr4:100847800-100866200	Weak transcription	HSMMtube	muscle
46	chr4:100848400-100856600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:100848400-100866200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr4:100849200-100853400	Weak transcription	Adipose Nuclei	Adipose
49	chr4:100849400-100855200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:100849600-100855000	Weak transcription	Duodenum Mucosa	Duodenum

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