Variant report

Variant	rs11723286
Chromosome Location	chr4:100801273-100801274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100799743..100801515-chr4:100802024..100804173,2	K562	blood:
2	chr4:100796548..100800180-chr4:100800813..100805431,5	K562	blood:
3	chr4:100799869..100822436-chr4:100866015..100873106,54	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1044044	0.81[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10516458	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097676	0.89[ASW][hapmap]
rs11097679	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11097680	1.00[ASW][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11097681	0.86[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097682	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097683	0.94[ASN][1000 genomes]
rs11097685	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097686	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11736218	0.94[ASW][hapmap];0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11736750	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11931053	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11931551	0.92[ASN][1000 genomes]
rs11932783	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11935458	0.88[CHB][hapmap];0.92[JPT][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11935615	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11936309	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11936580	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11937985	1.00[ASW][hapmap];0.82[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11938952	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11939538	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11941520	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11941799	0.94[ASW][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11944405	0.94[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944656	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11945303	0.94[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11947295	0.82[CEU][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1465518	0.92[JPT][hapmap]
rs1465519	0.91[JPT][hapmap]
rs17029573	0.89[ASW][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];0.92[JPT][hapmap];0.87[LWK][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17029662	0.84[ASW][hapmap];0.95[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17029673	0.94[ASW][hapmap];0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17029724	0.91[ASN][1000 genomes]
rs2017707	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2070738	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2081626	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2081627	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2162386	0.92[JPT][hapmap]
rs2276939	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2866179	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs34453741	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3733463	0.89[ASW][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap]
rs3737484	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.93[MEX][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3775500	0.89[ASW][hapmap]
rs3775501	0.89[ASW][hapmap]
rs3775512	0.84[JPT][hapmap]
rs3822103	0.92[JPT][hapmap]
rs4320141	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4536938	0.91[ASN][1000 genomes]
rs5015717	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55726736	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55797991	0.89[ASN][1000 genomes]
rs55888547	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56007968	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56140620	0.91[ASN][1000 genomes]
rs57322716	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58304154	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60070547	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs61191235	0.82[ASN][1000 genomes]
rs61203457	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62305038	0.91[ASN][1000 genomes]
rs62306101	0.93[ASN][1000 genomes]
rs6532834	1.00[ASW][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532837	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6532839	0.91[ASN][1000 genomes]
rs6532840	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6813099	0.89[ASW][hapmap];0.82[GIH][hapmap]
rs6814140	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6814181	0.94[ASW][hapmap];0.86[JPT][hapmap]
rs6816635	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.92[MEX][hapmap];0.96[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6824513	0.93[ASN][1000 genomes]
rs6829912	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6831193	0.92[ASN][1000 genomes]
rs6832726	0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6838495	0.91[ASN][1000 genomes]
rs6842840	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6843247	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6845556	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6848666	0.88[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72686215	0.93[ASN][1000 genomes]
rs732386	0.91[ASN][1000 genomes]
rs73832925	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7660185	0.93[ASN][1000 genomes]
rs7666156	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7686565	0.92[JPT][hapmap]
rs7687287	0.84[JPT][hapmap]
rs890486	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11723286	MTTP	cis	lymphoblastoid	seeQTL
rs11723286	MAPKSP1	cis	cerebellum	SCAN
rs11723286	MAPKSP1	cis	parietal	SCAN
rs11723286	DNAJB14	cis	parietal	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100789600-100805200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:100789600-100814200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:100789800-100801600	Weak transcription	Gastric	stomach
4	chr4:100789800-100805200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:100790400-100814600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:100793200-100801400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:100794600-100801400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:100796000-100801400	Weak transcription	Small Intestine	intestine
9	chr4:100796200-100801400	Weak transcription	Fetal Intestine Small	intestine
10	chr4:100796800-100803200	Strong transcription	Primary T cells from cord blood	blood
11	chr4:100797000-100809600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:100797600-100801400	Weak transcription	Fetal Stomach	stomach
13	chr4:100797600-100803600	Strong transcription	Brain Hippocampus Middle	brain
14	chr4:100797600-100809000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:100797800-100803400	Strong transcription	Fetal Lung	lung
16	chr4:100797800-100808400	Strong transcription	Adipose Nuclei	Adipose
17	chr4:100798000-100806200	Strong transcription	Primary B cells from peripheral blood	blood
18	chr4:100798000-100808200	Strong transcription	Liver	Liver
19	chr4:100798000-100809600	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr4:100798000-100810800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:100798200-100801400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:100798200-100803400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:100798200-100808400	Strong transcription	Placenta	Placenta
24	chr4:100798400-100806400	Strong transcription	HSMM	muscle
25	chr4:100798400-100814200	Weak transcription	Stomach Mucosa	stomach
26	chr4:100798600-100801600	Weak transcription	A549	lung
27	chr4:100798600-100803200	Strong transcription	Brain Cingulate Gyrus	brain
28	chr4:100798600-100803200	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:100798600-100805200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:100798600-100807600	Strong transcription	Duodenum Mucosa	Duodenum
31	chr4:100798600-100809000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr4:100798800-100803800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:100798800-100808400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr4:100799000-100802000	Strong transcription	Brain Germinal Matrix	brain
35	chr4:100799000-100803800	Strong transcription	Primary B cells from cord blood	blood
36	chr4:100799000-100804800	Strong transcription	HMEC	breast
37	chr4:100799000-100805600	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr4:100799000-100805800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:100799000-100806200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr4:100799000-100806600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr4:100799000-100806600	Strong transcription	Osteobl	bone
42	chr4:100799000-100808200	Strong transcription	NHDF-Ad	bronchial
43	chr4:100799000-100813400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr4:100799200-100802200	Strong transcription	Colonic Mucosa	Colon
45	chr4:100799200-100803600	Strong transcription	Primary hematopoietic stem cells	blood
46	chr4:100799200-100803800	Strong transcription	Fetal Thymus	thymus
47	chr4:100799200-100806200	Strong transcription	Dnd41	blood
48	chr4:100799200-100807200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr4:100799200-100808400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:100799200-100808400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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