Variant report

Variant	rs6838495
Chromosome Location	chr4:100930743-100930744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs1044044	0.94[ASN][1000 genomes]
rs10516458	0.94[ASN][1000 genomes]
rs11097679	0.91[ASN][1000 genomes]
rs11097680	0.91[ASN][1000 genomes]
rs11097681	0.94[ASN][1000 genomes]
rs11097682	0.94[ASN][1000 genomes]
rs11097683	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097685	1.00[ASN][1000 genomes]
rs11097686	0.96[ASN][1000 genomes]
rs11723286	0.91[ASN][1000 genomes]
rs11736218	0.96[ASN][1000 genomes]
rs11736750	0.98[ASN][1000 genomes]
rs11931053	0.94[ASN][1000 genomes]
rs11931551	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11932783	1.00[ASN][1000 genomes]
rs11935024	0.83[AFR][1000 genomes]
rs11935458	0.82[ASN][1000 genomes]
rs11935615	0.82[ASN][1000 genomes]
rs11936309	0.96[ASN][1000 genomes]
rs11936580	0.93[ASN][1000 genomes]
rs11937985	0.91[ASN][1000 genomes]
rs11938952	0.96[ASN][1000 genomes]
rs11939538	0.94[ASN][1000 genomes]
rs11941520	0.99[ASN][1000 genomes]
rs11941799	0.82[ASN][1000 genomes]
rs11944405	0.91[ASN][1000 genomes]
rs11944656	0.82[ASN][1000 genomes]
rs11945303	0.91[ASN][1000 genomes]
rs11947295	0.82[ASN][1000 genomes]
rs17029573	0.82[ASN][1000 genomes]
rs17029662	0.94[ASN][1000 genomes]
rs17029673	0.96[ASN][1000 genomes]
rs17029724	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2017707	0.87[ASN][1000 genomes]
rs2070738	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2081626	0.94[ASN][1000 genomes]
rs2081627	0.94[ASN][1000 genomes]
rs2276939	0.96[ASN][1000 genomes]
rs2866179	1.00[ASN][1000 genomes]
rs34453741	0.87[ASN][1000 genomes]
rs3737484	0.91[ASN][1000 genomes]
rs4320141	1.00[ASN][1000 genomes]
rs4536938	0.82[ASN][1000 genomes]
rs5015717	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs55726736	0.94[ASN][1000 genomes]
rs55797991	0.80[ASN][1000 genomes]
rs55888547	0.95[ASN][1000 genomes]
rs56007968	1.00[ASN][1000 genomes]
rs56140620	1.00[ASN][1000 genomes]
rs57322716	0.99[ASN][1000 genomes]
rs58304154	0.82[ASN][1000 genomes]
rs60070547	0.95[ASN][1000 genomes]
rs61191235	0.86[ASN][1000 genomes]
rs61203457	0.96[ASN][1000 genomes]
rs62305038	0.82[ASN][1000 genomes]
rs62306101	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532834	0.91[ASN][1000 genomes]
rs6532837	0.99[ASN][1000 genomes]
rs6532839	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6532840	0.95[ASN][1000 genomes]
rs6814140	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6816635	0.99[ASN][1000 genomes]
rs6824513	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6829912	0.91[ASN][1000 genomes]
rs6831193	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6832726	0.94[ASN][1000 genomes]
rs6842840	0.82[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6843247	0.99[ASN][1000 genomes]
rs6845556	0.95[ASN][1000 genomes]
rs6848666	0.82[ASN][1000 genomes]
rs72686215	0.98[ASN][1000 genomes]
rs732386	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73832925	0.96[ASN][1000 genomes]
rs7660185	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7666156	0.99[ASN][1000 genomes]
rs7666192	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7692416	0.83[AFR][1000 genomes]
rs890486	0.91[ASN][1000 genomes]
rs9307242	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000173	chr4:100928002-100964404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6838495	DAPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100929200-100930800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:100930000-100930800	Weak transcription	HSMM	muscle
3	chr4:100930000-100939400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:100930600-100930800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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