Variant report

Variant	rs61191235
Chromosome Location	chr4:100982995-100982996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100870881..100872772-chr4:100980721..100983825,3	K562	blood:

Variant related genes	Relation type
ENSG00000164032	Chromatin interaction
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1044044	0.81[ASN][1000 genomes]
rs10516458	0.81[ASN][1000 genomes]
rs11097679	0.82[ASN][1000 genomes]
rs11097681	0.81[ASN][1000 genomes]
rs11097682	0.81[ASN][1000 genomes]
rs11097683	0.83[ASN][1000 genomes]
rs11097685	0.86[ASN][1000 genomes]
rs11097686	0.87[ASN][1000 genomes]
rs11723286	0.82[ASN][1000 genomes]
rs11736218	0.83[ASN][1000 genomes]
rs11736750	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11931053	0.81[ASN][1000 genomes]
rs11931551	0.85[ASN][1000 genomes]
rs11932783	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11936309	0.83[ASN][1000 genomes]
rs11936580	0.84[ASN][1000 genomes]
rs11937985	0.82[ASN][1000 genomes]
rs11938952	0.83[ASN][1000 genomes]
rs11939538	0.81[ASN][1000 genomes]
rs11941520	0.85[ASN][1000 genomes]
rs11944405	0.82[ASN][1000 genomes]
rs11945303	0.82[ASN][1000 genomes]
rs17029662	0.81[ASN][1000 genomes]
rs17029673	0.83[ASN][1000 genomes]
rs17029724	0.91[ASN][1000 genomes]
rs2070738	0.83[ASN][1000 genomes]
rs2081626	0.81[ASN][1000 genomes]
rs2081627	0.81[ASN][1000 genomes]
rs2276939	0.83[ASN][1000 genomes]
rs2866179	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3737484	0.82[ASN][1000 genomes]
rs4320141	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5015717	0.83[ASN][1000 genomes]
rs55726736	0.81[ASN][1000 genomes]
rs55888547	0.91[ASN][1000 genomes]
rs56007968	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56140620	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57322716	0.85[ASN][1000 genomes]
rs60070547	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61203457	0.83[ASN][1000 genomes]
rs62306101	0.88[ASN][1000 genomes]
rs6532834	0.82[ASN][1000 genomes]
rs6532837	0.85[ASN][1000 genomes]
rs6532839	0.91[ASN][1000 genomes]
rs6532840	0.91[ASN][1000 genomes]
rs6814140	0.85[ASN][1000 genomes]
rs6816635	0.85[ASN][1000 genomes]
rs6824513	0.88[ASN][1000 genomes]
rs6829912	0.82[ASN][1000 genomes]
rs6831193	0.85[ASN][1000 genomes]
rs6832726	0.81[ASN][1000 genomes]
rs6838495	0.86[ASN][1000 genomes]
rs6842840	0.85[ASN][1000 genomes]
rs6843247	0.85[ASN][1000 genomes]
rs6845556	0.84[ASN][1000 genomes]
rs72686215	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs732386	0.86[ASN][1000 genomes]
rs73832925	0.83[ASN][1000 genomes]
rs7660185	0.88[ASN][1000 genomes]
rs7666156	0.85[ASN][1000 genomes]
rs890486	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100981800-100983200	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr4:100982000-100983600	Enhancers	Placenta	Placenta
3	chr4:100982600-100983800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:100982800-100984400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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