Variant report

Variant	rs60070547
Chromosome Location	chr4:100970921-100970922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:101)

rs_ID	r²[population]
rs1044044	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10516458	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11097679	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097680	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11097681	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11097682	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11097683	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11097685	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11097686	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11723286	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11736218	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11736750	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11931053	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11931551	0.94[ASN][1000 genomes]
rs11932783	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11935458	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11935615	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11936309	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11936580	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11937848	0.82[ASN][1000 genomes]
rs11937985	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11938952	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11939538	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11941520	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11941799	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11942532	0.82[ASN][1000 genomes]
rs11944405	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11944656	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11945303	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11947295	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11947412	0.82[ASN][1000 genomes]
rs17029573	0.82[ASN][1000 genomes]
rs17029662	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17029673	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17029724	1.00[ASN][1000 genomes]
rs2017707	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2070738	0.92[ASN][1000 genomes]
rs2081626	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2081627	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2276939	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2866179	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34453741	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs36109329	0.82[ASN][1000 genomes]
rs3737484	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4320141	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4343735	0.84[ASN][1000 genomes]
rs4492010	0.82[ASN][1000 genomes]
rs4536938	0.82[ASN][1000 genomes]
rs5015717	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55726736	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55797991	0.80[ASN][1000 genomes]
rs55888547	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56007968	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56140620	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56159765	0.82[ASN][1000 genomes]
rs56311063	0.82[ASN][1000 genomes]
rs57315614	0.82[ASN][1000 genomes]
rs57322716	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58304154	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs58385517	0.82[ASN][1000 genomes]
rs61191235	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61203457	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61351569	0.82[ASN][1000 genomes]
rs62305038	0.82[ASN][1000 genomes]
rs62306101	0.98[ASN][1000 genomes]
rs6532834	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6532837	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6532839	1.00[ASN][1000 genomes]
rs6532840	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532841	0.82[ASN][1000 genomes]
rs6532842	0.82[ASN][1000 genomes]
rs66903712	0.82[ASN][1000 genomes]
rs67594720	0.82[ASN][1000 genomes]
rs6813794	0.82[ASN][1000 genomes]
rs6814140	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6816635	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6824513	0.98[ASN][1000 genomes]
rs6825579	0.82[ASN][1000 genomes]
rs6829912	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6830286	0.82[ASN][1000 genomes]
rs6831193	0.94[ASN][1000 genomes]
rs6832726	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6838495	0.95[ASN][1000 genomes]
rs6842840	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6843247	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6845556	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6848666	0.82[ASN][1000 genomes]
rs72686215	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs732386	0.95[ASN][1000 genomes]
rs7340772	0.82[ASN][1000 genomes]
rs7340886	0.82[ASN][1000 genomes]
rs73832925	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7660185	0.98[ASN][1000 genomes]
rs7660479	0.82[ASN][1000 genomes]
rs7662195	0.82[ASN][1000 genomes]
rs7665301	0.82[ASN][1000 genomes]
rs7666156	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7668076	0.82[ASN][1000 genomes]
rs7676597	0.82[ASN][1000 genomes]
rs7687287	0.82[ASN][1000 genomes]
rs890486	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100970600-100971000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr4:100970600-100971400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:100970600-100971600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr4:100970600-100971800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:100970800-100971000	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr4:100970800-100971400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:100970800-100971600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr4:100970800-100971600	Enhancers	NH-A	brain

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