Variant report

Variant	rs17029724
Chromosome Location	chr4:100971639-100971640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100970987..100972778-chr4:100975629..100977996,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs1044044	0.89[ASN][1000 genomes]
rs10516458	0.89[ASN][1000 genomes]
rs11097679	0.91[ASN][1000 genomes]
rs11097680	0.86[ASN][1000 genomes]
rs11097681	0.89[ASN][1000 genomes]
rs11097682	0.89[ASN][1000 genomes]
rs11097683	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097685	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11097686	0.96[ASN][1000 genomes]
rs11723286	0.91[ASN][1000 genomes]
rs11736218	0.92[ASN][1000 genomes]
rs11736750	0.98[ASN][1000 genomes]
rs11931053	0.89[ASN][1000 genomes]
rs11931551	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11932783	0.95[ASN][1000 genomes]
rs11935458	0.82[ASN][1000 genomes]
rs11935615	0.82[ASN][1000 genomes]
rs11936309	0.92[ASN][1000 genomes]
rs11936580	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11937848	0.82[ASN][1000 genomes]
rs11937985	0.91[ASN][1000 genomes]
rs11938952	0.92[ASN][1000 genomes]
rs11939538	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11941520	0.94[ASN][1000 genomes]
rs11941799	0.82[ASN][1000 genomes]
rs11942532	0.82[ASN][1000 genomes]
rs11944405	0.91[ASN][1000 genomes]
rs11944656	0.82[ASN][1000 genomes]
rs11945303	0.91[ASN][1000 genomes]
rs11947295	0.82[ASN][1000 genomes]
rs11947412	0.82[ASN][1000 genomes]
rs17029573	0.82[ASN][1000 genomes]
rs17029662	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs17029673	0.92[ASN][1000 genomes]
rs2017707	0.87[ASN][1000 genomes]
rs2070738	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2081626	0.89[ASN][1000 genomes]
rs2081627	0.89[ASN][1000 genomes]
rs2276939	0.92[ASN][1000 genomes]
rs2866179	0.95[ASN][1000 genomes]
rs34453741	0.87[ASN][1000 genomes]
rs36109329	0.82[ASN][1000 genomes]
rs3737484	0.91[ASN][1000 genomes]
rs4320141	0.95[ASN][1000 genomes]
rs4343735	0.84[ASN][1000 genomes]
rs4492010	0.82[ASN][1000 genomes]
rs4536938	0.82[ASN][1000 genomes]
rs5015717	0.92[ASN][1000 genomes]
rs55726736	0.89[ASN][1000 genomes]
rs55797991	0.80[ASN][1000 genomes]
rs55888547	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56007968	0.95[ASN][1000 genomes]
rs56140620	0.95[ASN][1000 genomes]
rs56159765	0.82[ASN][1000 genomes]
rs56311063	0.82[ASN][1000 genomes]
rs57315614	0.82[ASN][1000 genomes]
rs57322716	0.94[ASN][1000 genomes]
rs58304154	0.82[ASN][1000 genomes]
rs58385517	0.82[ASN][1000 genomes]
rs60070547	1.00[ASN][1000 genomes]
rs61191235	0.91[ASN][1000 genomes]
rs61203457	0.92[ASN][1000 genomes]
rs61351569	0.82[ASN][1000 genomes]
rs62305038	0.82[ASN][1000 genomes]
rs62306101	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532834	0.91[ASN][1000 genomes]
rs6532837	0.94[ASN][1000 genomes]
rs6532839	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6532840	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6532841	0.82[ASN][1000 genomes]
rs6532842	0.82[ASN][1000 genomes]
rs66903712	0.82[ASN][1000 genomes]
rs67594720	0.82[ASN][1000 genomes]
rs6813794	0.82[ASN][1000 genomes]
rs6814140	0.94[ASN][1000 genomes]
rs6816635	0.94[ASN][1000 genomes]
rs6824513	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6825579	0.82[ASN][1000 genomes]
rs6829912	0.91[ASN][1000 genomes]
rs6830286	0.82[ASN][1000 genomes]
rs6831193	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6832726	0.89[ASN][1000 genomes]
rs6838495	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6842840	0.94[ASN][1000 genomes]
rs6843247	0.94[ASN][1000 genomes]
rs6845556	0.91[ASN][1000 genomes]
rs6848666	0.82[ASN][1000 genomes]
rs72686215	0.98[ASN][1000 genomes]
rs732386	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7340772	0.82[ASN][1000 genomes]
rs7340886	0.82[ASN][1000 genomes]
rs73832925	0.92[ASN][1000 genomes]
rs7660185	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7660479	0.82[ASN][1000 genomes]
rs7662195	0.82[ASN][1000 genomes]
rs7665301	0.82[ASN][1000 genomes]
rs7666156	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7666192	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7668076	0.82[ASN][1000 genomes]
rs7676597	0.82[ASN][1000 genomes]
rs7687287	0.82[ASN][1000 genomes]
rs890486	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17029724	DAPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100970600-100971800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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