Variant report

Variant	rs11097685
Chromosome Location	chr4:100943869-100943870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100932443..100934795-chr4:100942614..100944305,2	K562	blood:
2	chr4:100933295..100935388-chr4:100941563..100944305,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1044044	0.94[ASN][1000 genomes]
rs10516458	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097679	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11097680	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097681	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097682	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097683	0.96[ASN][1000 genomes]
rs11097686	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11723286	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11736218	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11736750	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11931053	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11931551	0.99[ASN][1000 genomes]
rs11932783	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935458	0.82[ASN][1000 genomes]
rs11935615	0.82[ASN][1000 genomes]
rs11936309	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11936580	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11937985	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11938952	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11939538	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11941520	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11941799	0.82[ASN][1000 genomes]
rs11944405	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11944656	0.82[ASN][1000 genomes]
rs11945303	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11947295	0.82[ASN][1000 genomes]
rs17029573	0.82[ASN][1000 genomes]
rs17029662	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17029673	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17029724	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2017707	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2070738	0.96[ASN][1000 genomes]
rs2081626	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2081627	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2276939	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2866179	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34453741	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3737484	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4320141	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536938	0.82[ASN][1000 genomes]
rs5015717	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55726736	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55797991	0.80[ASN][1000 genomes]
rs55888547	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56007968	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56140620	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57322716	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58304154	0.82[ASN][1000 genomes]
rs60070547	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61191235	0.86[ASN][1000 genomes]
rs61203457	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62305038	0.82[ASN][1000 genomes]
rs62306101	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6532834	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6532837	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6532839	0.95[ASN][1000 genomes]
rs6532840	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6814140	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6816635	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6824513	0.98[ASN][1000 genomes]
rs6829912	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6831193	0.99[ASN][1000 genomes]
rs6832726	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6838495	1.00[ASN][1000 genomes]
rs6842840	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6843247	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6845556	0.95[ASN][1000 genomes]
rs6848666	0.82[ASN][1000 genomes]
rs72686215	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs732386	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73832925	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7660185	0.98[ASN][1000 genomes]
rs7666156	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7666192	0.84[ASN][1000 genomes]
rs890486	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000173	chr4:100928002-100964404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100943000-100946000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr4:100943200-100945400	Enhancers	Fetal Heart	heart
3	chr4:100943400-100944200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:100943400-100944600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:100943400-100944600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:100943600-100944000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:100943600-100944200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:100943600-100944600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:100943800-100944200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:100943800-100944200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:100943800-100944200	Active TSS	Stomach Smooth Muscle	stomach
12	chr4:100943800-100944400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:100943800-100944400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:100943800-100944600	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr4:100943800-100944600	Enhancers	Colon Smooth Muscle	Colon
16	chr4:100943800-100944800	Enhancers	Pancreatic Islets	Pancreatic Islet

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