Variant report

Variant	rs11097683
Chromosome Location	chr4:100875740-100875741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100870166..100873808-chr4:100875168..100878123,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1044044	0.98[ASN][1000 genomes]
rs10516458	0.98[ASN][1000 genomes]
rs11097679	0.94[ASN][1000 genomes]
rs11097680	0.89[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11097681	0.98[ASN][1000 genomes]
rs11097682	0.91[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11097685	0.96[ASN][1000 genomes]
rs11097686	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11723286	0.94[ASN][1000 genomes]
rs11736218	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11736750	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11931053	0.98[ASN][1000 genomes]
rs11931551	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11932783	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11935458	0.85[ASN][1000 genomes]
rs11935615	0.85[ASN][1000 genomes]
rs11936309	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11936580	0.89[ASN][1000 genomes]
rs11937985	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11938952	1.00[ASN][1000 genomes]
rs11939538	0.98[ASN][1000 genomes]
rs11941520	0.98[ASN][1000 genomes]
rs11941799	0.85[ASN][1000 genomes]
rs11944405	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11944656	0.85[ASN][1000 genomes]
rs11945303	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11947295	0.85[ASN][1000 genomes]
rs17029573	0.85[ASN][1000 genomes]
rs17029662	0.98[ASN][1000 genomes]
rs17029673	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17029724	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2017707	0.91[ASN][1000 genomes]
rs2070738	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2081626	0.98[ASN][1000 genomes]
rs2081627	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2276939	1.00[ASN][1000 genomes]
rs2866179	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34453741	0.91[ASN][1000 genomes]
rs3737484	0.94[ASN][1000 genomes]
rs4320141	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs4536938	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs5015717	0.95[ASN][1000 genomes]
rs55726736	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs55797991	0.84[ASN][1000 genomes]
rs55888547	0.92[ASN][1000 genomes]
rs56007968	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs56140620	0.96[ASN][1000 genomes]
rs57322716	0.98[ASN][1000 genomes]
rs58304154	0.85[ASN][1000 genomes]
rs60070547	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61191235	0.83[ASN][1000 genomes]
rs61203457	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62305038	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62306101	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6532834	0.94[ASN][1000 genomes]
rs6532837	0.98[ASN][1000 genomes]
rs6532839	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6532840	0.92[ASN][1000 genomes]
rs6814140	0.98[ASN][1000 genomes]
rs6816635	0.98[ASN][1000 genomes]
rs6824513	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6829912	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6831193	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6832726	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6838495	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6842840	0.98[ASN][1000 genomes]
rs6843247	0.98[ASN][1000 genomes]
rs6845556	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6848666	0.85[ASN][1000 genomes]
rs72686215	0.94[ASN][1000 genomes]
rs732386	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73832925	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7660185	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7666156	0.98[ASN][1000 genomes]
rs7666192	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs890486	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879662	chr4:100849466-100876648	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	nsv879663	chr4:100866460-100876648	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11097683	DAPP1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100872600-100876000	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:100872600-100881800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:100872600-100886000	Weak transcription	Primary T cells from cord blood	blood
4	chr4:100872600-100886000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr4:100872600-100886200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr4:100873000-100876800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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