Variant report

Variant	rs6845556
Chromosome Location	chr4:100883290-100883291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100867408..100872938-chr4:100878480..100883746,9	MCF-7	breast:
2	chr4:100881761..100884128-chr4:100889355..100890930,2	K562	blood:
3	chr4:100866837..100874072-chr4:100882881..100890630,13	K562	blood:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164032	Chromatin interaction
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1044044	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10516458	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097679	0.88[ASN][1000 genomes]
rs11097680	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11097681	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097682	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11097683	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11097685	0.95[ASN][1000 genomes]
rs11097686	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11723286	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11736218	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11736750	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11931053	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11931551	0.96[ASN][1000 genomes]
rs11932783	0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11935458	0.92[JPT][hapmap]
rs11935615	1.00[JPT][hapmap]
rs11936309	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11936580	0.88[ASN][1000 genomes]
rs11937985	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11938952	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11939538	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11941520	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11941799	1.00[JPT][hapmap]
rs11942532	0.84[JPT][hapmap]
rs11944405	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11944656	1.00[JPT][hapmap]
rs11945303	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11947412	0.81[JPT][hapmap]
rs1465518	0.92[JPT][hapmap]
rs1465519	0.91[JPT][hapmap]
rs17029573	0.92[JPT][hapmap]
rs17029662	0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17029673	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17029724	0.91[ASN][1000 genomes]
rs2017707	0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2070738	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2081626	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2081627	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2162386	0.92[JPT][hapmap]
rs2276939	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2866179	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34453741	0.85[ASN][1000 genomes]
rs3733463	0.92[JPT][hapmap]
rs3737484	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs3775512	0.84[JPT][hapmap]
rs3822103	0.92[JPT][hapmap]
rs4320141	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5015717	0.94[ASN][1000 genomes]
rs55726736	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55888547	0.91[ASN][1000 genomes]
rs56007968	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56140620	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57322716	0.96[ASN][1000 genomes]
rs60070547	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61191235	0.84[ASN][1000 genomes]
rs61203457	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62306101	0.93[ASN][1000 genomes]
rs6532834	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6532837	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs6532839	0.91[ASN][1000 genomes]
rs6532840	0.91[ASN][1000 genomes]
rs6814140	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6814181	0.86[JPT][hapmap]
rs6816635	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6824513	0.93[ASN][1000 genomes]
rs6829912	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6831193	0.96[ASN][1000 genomes]
rs6832726	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6838495	0.95[ASN][1000 genomes]
rs6842840	0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6843247	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6848666	1.00[JPT][hapmap]
rs72686215	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs732386	0.95[ASN][1000 genomes]
rs73832925	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7660185	0.93[ASN][1000 genomes]
rs7666156	0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7666192	0.82[ASN][1000 genomes]
rs7686565	0.92[JPT][hapmap]
rs7687287	0.84[JPT][hapmap]
rs890486	0.88[ASN][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100872600-100886000	Weak transcription	Primary T cells from cord blood	blood
2	chr4:100872600-100886000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:100872600-100886200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:100877400-100885400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:100880400-100889600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:100882600-100885400	Weak transcription	Dnd41	blood
7	chr4:100882600-100889000	Weak transcription	Osteobl	bone
8	chr4:100882800-100888400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:100882800-100892800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:100883000-100889000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:100883200-100887800	Weak transcription	Muscle Satellite Cultured Cells	--

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