Variant report

Variant	rs3733463
Chromosome Location	chr4:100757048-100757049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100754974..100758082-chr4:100867339..100871318,4	K562	blood:
2	chr4:100757029..100759402-chr4:100761027..100763151,2	K562	blood:
3	chr4:100743200..100746311-chr4:100755153..100758233,3	K562	blood:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs1044044	0.90[CEU][hapmap];0.92[JPT][hapmap]
rs10516458	0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.80[TSI][hapmap]
rs11097676	0.89[ASW][hapmap];0.95[CEU][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs11097678	0.87[EUR][1000 genomes]
rs11097679	0.88[EUR][1000 genomes]
rs11097680	0.89[ASW][hapmap]
rs11097681	0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.80[TSI][hapmap]
rs11723286	0.89[ASW][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap]
rs11736218	0.83[ASW][hapmap];0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap]
rs11931053	0.88[ASW][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap]
rs11932783	0.90[CEU][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap]
rs11935458	0.95[CEU][hapmap];0.85[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11935615	0.95[CEU][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes]
rs11937985	0.89[ASW][hapmap];0.90[CEU][hapmap];0.92[GIH][hapmap];0.92[JPT][hapmap];0.84[LWK][hapmap];0.81[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs11939538	0.81[GIH][hapmap];0.92[JPT][hapmap]
rs11941520	0.92[JPT][hapmap]
rs11941799	0.94[ASW][hapmap];0.95[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs11944405	0.83[ASW][hapmap];0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs11944656	0.95[CEU][hapmap];0.92[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11945303	0.83[ASW][hapmap];0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes]
rs11947295	0.90[CEU][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1365491	0.95[CEU][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs1465518	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1465519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17029552	0.87[EUR][1000 genomes]
rs17029573	0.89[ASW][hapmap];1.00[CEU][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.80[MKK][hapmap];0.94[TSI][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17029662	0.81[GIH][hapmap];0.92[JPT][hapmap]
rs17029673	0.83[ASW][hapmap];0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap]
rs2017707	0.90[CEU][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2070738	0.92[JPT][hapmap]
rs2081626	0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap]
rs2162386	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2276939	0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap]
rs34453741	0.88[EUR][1000 genomes]
rs3737484	0.89[ASW][hapmap];0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.81[LWK][hapmap];0.83[TSI][hapmap];0.86[YRI][hapmap];0.88[EUR][1000 genomes]
rs3756085	0.97[ASN][1000 genomes]
rs3756086	0.99[ASN][1000 genomes]
rs3775500	0.89[ASW][hapmap];0.95[CEU][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes]
rs3775501	0.89[ASW][hapmap];0.95[CEU][hapmap];0.89[GIH][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes]
rs3822103	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4536938	0.87[AFR][1000 genomes]
rs55797991	0.81[AFR][1000 genomes]
rs55973331	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56174126	0.87[EUR][1000 genomes]
rs57798058	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58304154	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs58391911	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58534089	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532834	0.89[ASW][hapmap];0.86[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.85[LWK][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs6532837	0.92[JPT][hapmap]
rs6813099	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6814181	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];0.87[LWK][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6816635	0.83[ASW][hapmap];0.81[GIH][hapmap];0.92[JPT][hapmap]
rs6817649	0.90[CEU][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6829912	0.89[ASW][hapmap];0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.84[LWK][hapmap];0.82[MKK][hapmap];0.86[TSI][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs6832726	0.90[CEU][hapmap];0.92[JPT][hapmap];0.86[YRI][hapmap]
rs6842840	0.92[JPT][hapmap]
rs6845556	0.92[JPT][hapmap]
rs6848666	0.95[CEU][hapmap];0.83[CHD][hapmap];0.96[GIH][hapmap];0.92[JPT][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes]
rs6852487	0.87[CEU][hapmap];0.91[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs72684343	0.81[ASN][1000 genomes]
rs7666156	0.92[JPT][hapmap]
rs7666640	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7686565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688737	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7697357	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs890486	0.88[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3733463	MTTP	cis	lymphoblastoid	seeQTL

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100741400-100758200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr4:100743600-100758000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr4:100744000-100757200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:100744200-100757400	Weak transcription	Spleen	Spleen
5	chr4:100745000-100759400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:100745400-100765200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr4:100746400-100759800	Weak transcription	Placenta	Placenta
8	chr4:100747000-100765400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:100750800-100759800	Weak transcription	HMEC	breast
10	chr4:100751800-100757400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr4:100752200-100765200	Strong transcription	Primary B cells from peripheral blood	blood
12	chr4:100753400-100765000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr4:100753800-100757400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:100754200-100761000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:100754600-100764400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr4:100754800-100759800	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr4:100755000-100759800	Strong transcription	NHEK	skin
18	chr4:100755000-100766400	Strong transcription	Primary B cells from cord blood	blood
19	chr4:100755200-100759600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:100755200-100766400	Weak transcription	Aorta	Aorta
21	chr4:100755400-100776000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:100755600-100759600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:100755600-100759800	Weak transcription	Liver	Liver
24	chr4:100755600-100766400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:100755800-100764400	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr4:100756200-100763600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr4:100756400-100760400	Strong transcription	Primary T cells from cord blood	blood
28	chr4:100756400-100761400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:100756400-100763400	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:100756400-100765200	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr4:100756400-100765600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr4:100756600-100758400	Strong transcription	Esophagus	oesophagus
33	chr4:100756600-100759200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr4:100756600-100761000	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr4:100756600-100761400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:100756600-100763400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr4:100756600-100764000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr4:100756600-100765000	Strong transcription	GM12878-XiMat	blood
39	chr4:100756800-100758600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:100756800-100759000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:100757000-100758600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood

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