Variant report

Variant	rs6817649
Chromosome Location	chr4:100730746-100730747
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:100482505..100484311-chr4:100728147..100731053,2	MCF-7	breast:
2	chr4:100729667..100733158-chr4:100802564..100806778,3	MCF-7	breast:
3	chr4:100729924..100732920-chr4:100868919..100870955,3	K562	blood:
4	chr4:100729962..100733399-chr4:100867213..100870513,5	K562	blood:
5	chr4:100730367..100732782-chr4:100869185..100871899,3	MCF-7	breast:
6	chr4:100506318..100508335-chr4:100729630..100732239,2	MCF-7	breast:
7	chr4:100728801..100731291-chr4:100734823..100736521,2	K562	blood:
8	chr4:100482002..100484856-chr4:100726291..100730925,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction
ENSG00000164031	Chromatin interaction
ENSG00000145331	Chromatin interaction
ENSG00000164032	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1044044	0.90[CEU][hapmap]
rs10516458	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs11097676	0.85[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs11097678	0.82[EUR][1000 genomes]
rs11097679	0.85[EUR][1000 genomes]
rs11097681	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs11736218	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs11932783	0.90[CEU][hapmap]
rs11935458	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs11935615	0.95[CEU][hapmap];0.88[EUR][1000 genomes]
rs11937985	0.90[CEU][hapmap];0.89[GIH][hapmap]
rs11941520	0.85[JPT][hapmap]
rs11941799	0.95[CEU][hapmap];0.96[GIH][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs11944405	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs11944656	0.95[CEU][hapmap];0.86[EUR][1000 genomes]
rs11945303	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs11947295	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs1365491	0.85[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs1465518	0.89[CHB][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap]
rs1465519	0.94[CEU][hapmap];0.87[CHB][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17029552	0.82[EUR][1000 genomes]
rs17029573	0.90[CEU][hapmap];0.96[GIH][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes]
rs17029673	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs2017707	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs2081626	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs2162386	0.88[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap]
rs2276939	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs34453741	0.85[EUR][1000 genomes]
rs3733463	0.90[CEU][hapmap];0.89[CHB][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3737484	0.90[CEU][hapmap];0.85[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs3775500	0.85[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs3775501	0.85[CEU][hapmap];0.93[GIH][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs3822103	0.89[CHB][hapmap];0.80[CHD][hapmap];0.81[JPT][hapmap]
rs55973331	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56174126	0.82[EUR][1000 genomes]
rs57798058	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58304154	0.88[EUR][1000 genomes]
rs58391911	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58534089	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6532834	0.86[CEU][hapmap];0.85[GIH][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes]
rs6813099	0.90[CEU][hapmap];0.96[GIH][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6814181	0.90[CEU][hapmap];0.89[CHB][hapmap];0.80[CHD][hapmap];0.89[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6829912	0.90[CEU][hapmap];0.85[GIH][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs6832726	0.90[CEU][hapmap]
rs6848666	0.95[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs6852487	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs72684343	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7666640	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7686565	0.90[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.94[EUR][1000 genomes]
rs7688737	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7697357	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs890486	0.85[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6817649	MAPKSP1	cis	cerebellum	SCAN
rs6817649	DNAJB14	cis	parietal	SCAN
rs6817649	MAPKSP1	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100723200-100741000	Weak transcription	Right Atrium	heart
2	chr4:100727600-100738000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:100729400-100731000	Enhancers	Fetal Lung	lung
4	chr4:100729600-100731400	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:100729800-100733000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:100730200-100731400	Enhancers	Fetal Brain Female	brain
7	chr4:100730600-100731000	Enhancers	Pancreatic Islets	Pancreatic Islet

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