Variant report

Variant	rs17029673
Chromosome Location	chr4:100872365-100872366
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:47)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:47 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr4:100869811-100872485	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr4:100870127-100872617	Raji	blood:	n/a	n/a
3	HA-E2F1	chr4:100870132-100872374	MCF-7	breast:	n/a	chr4:100871550-100871559
4	WRNIP1	chr4:100871195-100872513	GM12878	blood:	n/a	n/a
5	TBP	chr4:100870033-100872440	K562	blood:	n/a	n/a
6	CEBPB	chr4:100871252-100872560	Hela-S3	cervix:	n/a	chr4:100871551-100871559
7	NFATC1	chr4:100872080-100872659	GM12878	blood:	n/a	n/a
8	E2F4	chr4:100870128-100872613	MCF10A-Er-Src	breast:	n/a	chr4:100871435-100871446 chr4:100870611-100870619 chr4:100870840-100870848 chr4:100871550-100871559
9	CEBPB	chr4:100872010-100872549	K562	blood:	n/a	n/a
10	STAT3	chr4:100872348-100872380	GM12878	blood:	n/a	n/a
11	MYC	chr4:100870084-100872648	K562	blood:	n/a	chr4:100871615-100871624
12	POLR2A	chr4:100869954-100872535	K562	blood:	n/a	n/a
13	RUNX3	chr4:100871155-100872450	GM12878	blood:	n/a	n/a
14	POLR2A	chr4:100869903-100872462	GM12878	blood:	n/a	n/a
15	MYC	chr4:100870184-100872534	K562	blood:	n/a	chr4:100871615-100871624
16	POLR2A	chr4:100870010-100872373	GM18505	blood:	n/a	n/a
17	GTF2F1	chr4:100871185-100872584	Hela-S3	cervix:	n/a	n/a
18	POLR2A	chr4:100870008-100872451	K562	blood:	n/a	n/a
19	POLR2A	chr4:100870040-100872532	MCF10A-Er-Src	breast:	n/a	n/a
20	MYC	chr4:100870141-100872518	NB4	blood:	n/a	chr4:100871615-100871624
21	POLR2A	chr4:100869924-100872484	PBDE	blood:	n/a	n/a
22	POLR2A	chr4:100869985-100872439	K562	blood:	n/a	n/a
23	POLR2A	chr4:100869948-100872408	HL-60	blood:	n/a	n/a
24	SIN3A	chr4:100870020-100872428	H1-hESC	embryonic stem cell:	n/a	n/a
25	ZNF263	chr4:100871148-100872468	HEK293-T-REx	kidney:	n/a	n/a
26	MAZ	chr4:100869899-100872506	IMR90	lung:	n/a	chr4:100871615-100871624
27	POLR2A	chr4:100869401-100872488	GM12878	blood:	n/a	n/a
28	POLR2A	chr4:100865896-100872667	H1-hESC	embryonic stem cell:	n/a	n/a
29	MAX	chr4:100872295-100872466	GM12878	blood:	n/a	n/a
30	POLR2A	chr4:100866125-100872569	K562	blood:	n/a	n/a
31	MAX	chr4:100870128-100872551	NB4	blood:	n/a	chr4:100871615-100871624
32	PML	chr4:100869838-100872556	GM12878	blood:	n/a	n/a
33	SMC3	chr4:100869867-100872610	SK-N-SH	brain:	n/a	n/a
34	POLR2A	chr4:100870091-100872550	Hela-S3	cervix:	n/a	n/a
35	BHLHE40	chr4:100870102-100872513	K562	blood:	n/a	n/a
36	CHD2	chr4:100870096-100872382	GM12878	blood:	n/a	n/a
37	POLR2A	chr4:100870028-100872513	GM12878	blood:	n/a	n/a
38	MYC	chr4:100870131-100872535	K562	blood:	n/a	chr4:100871615-100871624
39	MXI1	chr4:100869902-100872784	SK-N-SH	brain:	n/a	n/a
40	MAX	chr4:100870131-100872586	Hela-S3	cervix:	n/a	chr4:100871615-100871624
41	MYC	chr4:100871144-100872406	A549	lung:	n/a	chr4:100871615-100871624
42	POLR2A	chr4:100869961-100872600	K562	blood:	n/a	n/a
43	MTA3	chr4:100871109-100872652	GM12878	blood:	n/a	n/a
44	POLR2A	chr4:100869904-100872513	K562	blood:	n/a	n/a
45	POLR2A	chr4:100869876-100872783	HepG2	liver:	n/a	n/a
46	POLR2A	chr4:100869921-100872542	GM12891	blood:	n/a	n/a
47	POLR2A	chr4:100871091-100872407	SK-N-MC	brain:	n/a	n/a

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:100799869..100822436-chr4:100866015..100873106,54	K562	blood:
2	chr4:99848589..99851336-chr4:100870396..100872880,2	MCF-7	breast:
3	chr4:100814600..100817376-chr4:100869817..100872742,4	MCF-7	breast:
4	chr4:99848722..99851880-chr4:100870275..100872713,4	K562	blood:
5	chr13:91999673..92001318-chr4:100870740..100872493,2	K562	blood:
6	chr4:99915655..99920524-chr4:100869895..100872849,4	K562	blood:
7	chr4:100870517..100873586-chr4:103747603..103750269,4	K562	blood:
8	chr4:100737796..100739417-chr4:100869938..100872690,3	MCF-7	breast:
9	chr4:100810623..100827791-chr4:100865444..100874425,55	K562	blood:
10	chr4:100480938..100486909-chr4:100867873..100873651,15	K562	blood:
11	chr4:100871315..100874297-chr4:103746830..103749271,3	K562	blood:
12	chr4:100784573..100786137-chr4:100870218..100872755,2	K562	blood:
13	chr4:100850716..100855335-chr4:100865818..100872882,15	K562	blood:
14	chr4:100824278..100827001-chr4:100871760..100873443,2	K562	blood:
15	chr17:79280417..79282564-chr4:100871183..100873116,2	MCF-7	breast:
16	chr4:100483475..100486481-chr4:100870338..100872441,3	MCF-7	breast:
17	chr4:100483327..100486538-chr4:100869980..100873651,6	K562	blood:
18	chr4:100840471..100849591-chr4:100866268..100873122,18	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DAPP1-2	chr4:100871517-100873711	NONHSAT097550
2	lnc-DAPP1-2	chr4:100871636-100873620	NR_002799

No data

Variant related genes	Relation type
DNAJB14	TF binding region
H2AFZ	TF binding region
ENSG00000138823	Chromatin interaction
ENSG00000164024	Chromatin interaction
ENSG00000185168	Chromatin interaction
ENSG00000238449	Chromatin interaction
ENSG00000265213	Chromatin interaction
ENSG00000164031	Chromatin interaction
ENSG00000109270	Chromatin interaction
ENSG00000263923	Chromatin interaction
ENSG00000246560	Chromatin interaction
ENSG00000215417	Chromatin interaction
ENSG00000145331	Chromatin interaction
ENSG00000070190	Chromatin interaction
ENSG00000151247	Chromatin interaction
ENSG00000109332	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1044044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10516458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097676	0.83[ASW][hapmap];0.85[CEU][hapmap]
rs11097679	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097680	0.94[ASW][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11097681	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097682	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11097683	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11097685	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11097686	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11723286	0.94[ASW][hapmap];0.82[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11736218	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11931053	0.94[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11931551	0.98[ASN][1000 genomes]
rs11932783	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11935458	0.95[CEU][hapmap];0.81[CHB][hapmap];0.92[JPT][hapmap];0.93[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11935615	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11936309	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11936580	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11937985	0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11938952	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11939538	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11941520	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11941799	0.88[ASW][hapmap];0.95[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11942532	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs11944405	0.88[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944656	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11945303	0.88[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11947295	0.90[CEU][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11947412	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs1365491	0.85[CEU][hapmap]
rs1465518	0.92[JPT][hapmap]
rs1465519	0.89[CEU][hapmap];0.91[JPT][hapmap];0.80[YRI][hapmap]
rs17029573	0.83[ASW][hapmap];0.90[CEU][hapmap];0.81[CHB][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];0.87[MKK][hapmap];0.87[TSI][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17029662	1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.95[TSI][hapmap];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17029724	0.92[ASN][1000 genomes]
rs2017707	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2070738	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2081626	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2081627	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2162386	0.92[JPT][hapmap]
rs2276939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866179	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34453741	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3733463	0.83[ASW][hapmap];0.90[CEU][hapmap];0.88[GIH][hapmap];0.92[JPT][hapmap];0.81[TSI][hapmap];0.82[YRI][hapmap]
rs3737484	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.85[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775500	0.83[ASW][hapmap];0.85[CEU][hapmap]
rs3775501	0.83[ASW][hapmap];0.85[CEU][hapmap]
rs3775512	0.84[JPT][hapmap]
rs3822103	0.92[JPT][hapmap]
rs4320141	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4536938	0.85[ASN][1000 genomes]
rs5015717	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55726736	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55797991	0.84[ASN][1000 genomes]
rs55888547	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56007968	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56140620	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57322716	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58304154	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60070547	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61191235	0.83[ASN][1000 genomes]
rs61203457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62305038	0.85[ASN][1000 genomes]
rs62306101	0.94[ASN][1000 genomes]
rs6532834	0.94[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.89[MKK][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6532837	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532839	0.92[ASN][1000 genomes]
rs6532840	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6813099	0.83[ASW][hapmap];0.90[CEU][hapmap];0.88[GIH][hapmap];0.82[YRI][hapmap]
rs6814140	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6814181	0.89[ASW][hapmap];0.90[CEU][hapmap];0.81[GIH][hapmap];0.86[JPT][hapmap]
rs6816635	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6817649	0.90[CEU][hapmap];0.85[GIH][hapmap]
rs6824513	0.94[ASN][1000 genomes]
rs6829912	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.92[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6831193	0.98[ASN][1000 genomes]
rs6832726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6838495	0.96[ASN][1000 genomes]
rs6842840	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6843247	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6845556	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6848666	0.95[CEU][hapmap];0.81[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72686215	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs732386	0.96[ASN][1000 genomes]
rs73832925	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7660185	0.94[ASN][1000 genomes]
rs7666156	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7666192	0.82[ASN][1000 genomes]
rs7686565	0.90[CEU][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap]
rs7687287	0.81[CEU][hapmap];0.82[CHB][hapmap];0.84[JPT][hapmap]
rs890486	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879662	chr4:100849466-100876648	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	nsv879663	chr4:100866460-100876648	Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17029673	MAPKSP1	cis	parietal	SCAN
rs17029673	H2AFZ	cis	cerebellum	SCAN
rs17029673	MAPKSP1	cis	cerebellum	SCAN
rs17029673	DNAJB14	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100869000-100872400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:100869200-100872400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:100869200-100872800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:100869600-100872400	Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr4:100869600-100872400	Active TSS	NHDF-Ad	bronchial
6	chr4:100869800-100872400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:100869800-100872400	Active TSS	Fetal Intestine Large	intestine
8	chr4:100869800-100872600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr4:100869800-100872600	Active TSS	Stomach Smooth Muscle	stomach
10	chr4:100869800-100872600	Active TSS	HSMMtube	muscle
11	chr4:100870000-100872400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:100870000-100872400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:100870000-100872400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:100870000-100872400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:100870000-100872400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr4:100870000-100872400	Active TSS	Esophagus	oesophagus
17	chr4:100870000-100872400	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr4:100870000-100872400	Active TSS	Ovary	ovary
19	chr4:100870000-100872400	Active TSS	Pancreas	Pancrea
20	chr4:100870000-100872600	Active TSS	Aorta	Aorta
21	chr4:100870000-100872600	Active TSS	Fetal Muscle Trunk	muscle
22	chr4:100870000-100872600	Active TSS	Left Ventricle	heart
23	chr4:100870000-100872600	Active TSS	Right Ventricle	heart
24	chr4:100870200-100872400	Active TSS	H1 Cell Line	embryonic stem cell
25	chr4:100870200-100872400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:100870200-100872400	Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr4:100870200-100872400	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr4:100870200-100872400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:100870200-100872400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr4:100870200-100872400	Active TSS	Muscle Satellite Cultured Cells	--
31	chr4:100870200-100872400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:100870200-100872400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr4:100870200-100872400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:100870200-100872400	Active TSS	Fetal Lung	lung
35	chr4:100870200-100872400	Active TSS	Fetal Muscle Leg	muscle
36	chr4:100870200-100872400	Active TSS	Fetal Stomach	stomach
37	chr4:100870200-100872400	Active TSS	Fetal Thymus	thymus
38	chr4:100870200-100872400	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr4:100870200-100872400	Active TSS	Rectal Smooth Muscle	rectum
40	chr4:100870200-100872400	Active TSS	A549	lung
41	chr4:100870200-100872400	Active TSS	GM12878-XiMat	blood
42	chr4:100870200-100872400	Active TSS	Hela-S3	cervix
43	chr4:100870200-100872400	Bivalent/Poised TSS	HepG2	liver
44	chr4:100870200-100872400	Active TSS	K562	blood
45	chr4:100870200-100872600	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr4:100870200-100872600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr4:100870200-100872600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:100870200-100872600	Active TSS	HUES64 Cell Line	embryonic stem cell
49	chr4:100870200-100872600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:100870200-100872600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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