Variant report

Variant	rs1365495
Chromosome Location	chr4:100734264-100734265
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100733785..100736226-chr4:100868711..100870778,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11097676	0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.83[MEX][hapmap];0.97[ASN][1000 genomes]
rs11097677	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs11097678	0.96[ASN][1000 genomes]
rs11732776	0.91[JPT][hapmap]
rs1365491	0.91[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.96[ASN][1000 genomes]
rs1365492	0.91[JPT][hapmap]
rs1426735	0.96[ASN][1000 genomes]
rs1465518	0.88[GIH][hapmap]
rs17029552	0.96[ASN][1000 genomes]
rs17029563	0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];0.95[ASN][1000 genomes]
rs17029583	0.80[ASN][1000 genomes]
rs1863608	0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1896166	0.91[JPT][hapmap]
rs1961323	0.91[JPT][hapmap]
rs1972698	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2114442	0.91[JPT][hapmap]
rs2282588	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2298735	0.91[JPT][hapmap]
rs2866174	0.87[JPT][hapmap]
rs3756085	0.86[EUR][1000 genomes]
rs3756086	0.86[EUR][1000 genomes]
rs3756087	0.91[JPT][hapmap]
rs3775499	0.88[ASW][hapmap];0.91[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs3775500	0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.96[ASN][1000 genomes]
rs3775501	0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.87[MEX][hapmap];0.97[ASN][1000 genomes]
rs4699764	0.83[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.97[ASN][1000 genomes]
rs4699765	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56174126	0.95[ASN][1000 genomes]
rs6532833	0.83[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs6532835	0.91[JPT][hapmap]
rs6814895	0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes]
rs6848337	0.91[JPT][hapmap]
rs6849599	0.87[CHD][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs6854536	0.91[JPT][hapmap]
rs715239	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7676564	0.91[JPT][hapmap]
rs7684872	0.91[JPT][hapmap]
rs7686428	0.91[JPT][hapmap]
rs7687842	0.96[ASN][1000 genomes]
rs7688733	0.95[ASN][1000 genomes]
rs7689566	0.91[JPT][hapmap]
rs7698065	0.97[ASN][1000 genomes]
rs919132	0.91[JPT][hapmap]
rs919133	0.91[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1365495	DNAJB14	cis	parietal	SCAN
rs1365495	MAPKSP1	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100723200-100741000	Weak transcription	Right Atrium	heart
2	chr4:100727600-100738000	Weak transcription	Fetal Muscle Leg	muscle
3	chr4:100731400-100736400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr4:100732000-100735000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr4:100732000-100737000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:100733400-100734800	Weak transcription	GM12878-XiMat	blood
7	chr4:100733400-100736600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:100733600-100736000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:100733600-100736000	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:100733600-100736200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:100733600-100736800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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