Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10007142	1.00[JPT][hapmap]
rs11943443	0.95[YRI][hapmap]
rs11946089	0.95[YRI][hapmap]
rs12640304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12647173	0.84[CEU][hapmap]
rs17040080	0.95[YRI][hapmap]
rs17040084	0.95[YRI][hapmap]
rs17040089	0.95[YRI][hapmap]
rs17040091	0.95[YRI][hapmap]
rs17040094	0.95[YRI][hapmap]
rs17040097	0.95[YRI][hapmap]
rs2007788	0.84[YRI][hapmap]
rs2158470	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2158471	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2189705	0.95[YRI][hapmap]
rs35702755	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs41390947	0.95[YRI][hapmap]
rs41395650	0.90[YRI][hapmap]
rs4956247	0.84[CEU][hapmap]
rs6533421	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7656748	0.95[YRI][hapmap]
rs7675810	0.95[YRI][hapmap]
rs7692009	0.95[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110137600-110154400	Weak transcription	Hela-S3	cervix
2	chr4:110152600-110155600	Enhancers	HSMM	muscle
3	chr4:110152600-110156000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:110152800-110155200	Enhancers	HSMMtube	muscle
5	chr4:110153800-110154800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:110154000-110154400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:110154000-110155400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:110154000-110155800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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