Variant report

Variant	rs6533421
Chromosome Location	chr4:110154697-110154698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10488877	0.80[MEX][hapmap]
rs11943391	0.82[AFR][1000 genomes]
rs12640239	0.84[CEU][hapmap]
rs12640304	1.00[CEU][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12647173	0.84[CEU][hapmap]
rs13126849	0.83[CEU][hapmap]
rs17039959	0.84[CEU][hapmap]
rs2158469	0.80[MEX][hapmap]
rs2158470	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2158471	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35702755	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4956247	0.84[CEU][hapmap];0.86[MEX][hapmap]
rs6533420	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7682615	0.81[MEX][hapmap]
rs7686421	0.81[AFR][1000 genomes]
rs7695378	0.87[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110152600-110155600	Enhancers	HSMM	muscle
2	chr4:110152600-110156000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:110152800-110155200	Enhancers	HSMMtube	muscle
4	chr4:110153800-110154800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:110154000-110155400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:110154000-110155800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:110154400-110155200	Enhancers	Hela-S3	cervix
8	chr4:110154400-110155200	Enhancers	NHEK	skin
9	chr4:110154600-110155000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr4:110154600-110155600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links