Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10488877	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12640304	0.84[CEU][hapmap];0.85[AMR][1000 genomes]
rs12647173	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1297945	0.93[JPT][hapmap]
rs13120461	0.84[ASN][1000 genomes]
rs13126849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13131599	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13133009	0.84[ASN][1000 genomes]
rs13147337	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16997032	0.88[JPT][hapmap]
rs17039959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2158469	0.87[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2158470	0.82[AMR][1000 genomes]
rs35164053	0.84[ASN][1000 genomes]
rs4956247	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6533421	0.84[CEU][hapmap]
rs6857867	0.84[ASN][1000 genomes]
rs7675039	0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7682615	0.88[JPT][hapmap]
rs7692025	0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs7695378	0.88[JPT][hapmap]
rs9993777	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110152600-110155600	Enhancers	HSMM	muscle
2	chr4:110152600-110156000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr4:110152800-110155200	Enhancers	HSMMtube	muscle
4	chr4:110154000-110155400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:110154000-110155800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:110154400-110155200	Enhancers	Hela-S3	cervix
7	chr4:110154400-110155200	Enhancers	NHEK	skin
8	chr4:110154600-110155000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr4:110154600-110155600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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