Variant report

Variant	rs17039959
Chromosome Location	chr4:110069323-110069324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10488877	0.93[JPT][hapmap]
rs12640239	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12640304	0.84[CEU][hapmap]
rs12647173	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1297945	0.93[JPT][hapmap]
rs13126849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13131599	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13147337	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16997032	0.82[JPT][hapmap]
rs2158469	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs4956247	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6533421	0.84[CEU][hapmap]
rs7675039	0.86[CHB][hapmap];0.94[JPT][hapmap]
rs7682615	0.82[JPT][hapmap]
rs7692025	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs7695378	0.82[JPT][hapmap]
rs9993777	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110047000-110085400	Weak transcription	Hela-S3	cervix
2	chr4:110065600-110069800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr4:110067400-110075600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:110068000-110075400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:110068200-110069800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr4:110068200-110072000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:110068400-110069600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:110068400-110069600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:110068400-110069600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:110068600-110069800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr4:110068600-110069800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:110068600-110071000	Weak transcription	Right Atrium	heart
13	chr4:110069000-110070400	Flanking Active TSS	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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