Variant report

Variant	rs6533827
Chromosome Location	chr4:79546714-79546715
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79546177..79548904-chr4:79704201..79706828,2	K562	blood:
2	chr4:79546113..79548024-chr4:79757297..79759344,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10028815	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10029214	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10857035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11098274	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11098275	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11098278	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11932080	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12510383	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12510411	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12639656	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12644222	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12711028	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13110339	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1346145	0.80[AMR][1000 genomes]
rs1532427	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28579596	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34636970	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4074675	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4254805	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4495064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4560439	0.80[AMR][1000 genomes]
rs4612	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4645238	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5944	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62308286	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6533828	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6815367	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6817175	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6821449	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6822675	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6825328	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6842686	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6842723	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7656801	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7659978	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7675464	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7675646	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7677783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7699905	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79518000-79548000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:79533800-79548800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:79534600-79547800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:79536400-79550600	Weak transcription	Left Ventricle	heart
5	chr4:79539200-79549800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr4:79539400-79550400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:79539600-79550000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:79542200-79555600	Enhancers	Fetal Intestine Small	intestine
9	chr4:79542600-79555600	Enhancers	Fetal Intestine Large	intestine
10	chr4:79544000-79548000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:79544200-79547800	Weak transcription	NHLF	lung
12	chr4:79544200-79548000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr4:79544200-79548000	Weak transcription	Hela-S3	cervix
14	chr4:79544200-79548200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:79544200-79550600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:79544400-79548000	Weak transcription	Osteobl	bone
17	chr4:79545800-79548400	Weak transcription	NHDF-Ad	bronchial
18	chr4:79545800-79549600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:79545800-79550000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:79545800-79550200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr4:79545800-79550800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr4:79546000-79548000	Weak transcription	HepG2	liver
23	chr4:79546000-79548000	Weak transcription	K562	blood
24	chr4:79546200-79547600	Weak transcription	Stomach Mucosa	stomach
25	chr4:79546200-79548400	Weak transcription	A549	lung
26	chr4:79546200-79550000	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr4:79546600-79547000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:79546600-79547600	Weak transcription	GM12878-XiMat	blood
29	chr4:79546600-79553000	Enhancers	Placenta	Placenta

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