Variant report

Variant	rs4074675
Chromosome Location	chr4:79584807-79584808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:79581022..79584954-chr4:79599701..79603406,3	K562	blood:
2	chr4:79581907..79584896-chr4:79611311..79615634,4	K562	blood:
3	chr4:79577188..79580624-chr4:79581809..79584972,3	K562	blood:
4	chr4:79583593..79586061-chr4:79586877..79589613,2	MCF-7	breast:
5	chr4:79581907..79584896-chr4:79611311..79614789,3	K562	blood:
6	chr4:79580127..79585145-chr4:79585599..79588670,4	K562	blood:
7	chr4:79573609..79576927-chr4:79583175..79586831,3	MCF-7	breast:
8	chr4:79577940..79580731-chr4:79581809..79584953,3	K562	blood:

No data

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10008008	0.84[EUR][1000 genomes]
rs10008069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10028815	0.87[CEU][hapmap]
rs10029214	0.92[CEU][hapmap]
rs10857035	0.86[AMR][1000 genomes]
rs11098278	0.82[AMR][1000 genomes]
rs1134123	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1134124	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11724233	0.81[CHB][hapmap]
rs11932080	0.86[AMR][1000 genomes]
rs12510411	0.92[CEU][hapmap]
rs12639656	0.92[CEU][hapmap]
rs12711028	0.82[CEU][hapmap]
rs13110339	0.91[CEU][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13133277	0.85[EUR][1000 genomes]
rs1346144	0.82[EUR][1000 genomes]
rs1346145	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1532427	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.80[AMR][1000 genomes]
rs1806906	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1834519	0.86[EUR][1000 genomes]
rs28579596	0.86[AMR][1000 genomes]
rs2867465	0.85[EUR][1000 genomes]
rs2867466	0.85[EUR][1000 genomes]
rs4254805	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4257676	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4264856	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4321658	0.88[EUR][1000 genomes]
rs4365753	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4472162	0.85[CHB][hapmap];0.80[EUR][1000 genomes]
rs4472163	0.85[CHB][hapmap];0.80[EUR][1000 genomes]
rs4495064	0.91[CEU][hapmap];0.80[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4560439	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4612	0.91[CEU][hapmap]
rs4619914	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62308286	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6533827	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6533828	0.85[AMR][1000 genomes]
rs6533940	0.85[EUR][1000 genomes]
rs6533951	0.80[CHB][hapmap]
rs6815367	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6818230	0.85[EUR][1000 genomes]
rs6825593	0.80[EUR][1000 genomes]
rs6842686	0.92[CEU][hapmap]
rs6842723	0.92[CEU][hapmap];0.80[CHB][hapmap];0.85[JPT][hapmap]
rs6855458	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7656801	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7659978	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7672835	0.80[CEU][hapmap]
rs7675464	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7675646	0.92[CEU][hapmap]
rs7677783	0.91[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7699905	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9992088	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79564400-79589600	Weak transcription	Lung	lung
2	chr4:79573800-79587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:79579400-79588000	Weak transcription	Spleen	Spleen
4	chr4:79579600-79585000	Weak transcription	Placenta	Placenta
5	chr4:79580000-79588000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:79580000-79588000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:79582000-79588400	Enhancers	Fetal Intestine Large	intestine
8	chr4:79582000-79588600	Enhancers	Fetal Intestine Small	intestine
9	chr4:79582400-79585200	Enhancers	Primary B cells from peripheral blood	blood
10	chr4:79582400-79586600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:79582800-79586000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:79582800-79586800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:79583000-79587000	Enhancers	K562	blood
14	chr4:79583200-79586000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr4:79583600-79586800	Weak transcription	Small Intestine	intestine
16	chr4:79583600-79588200	Weak transcription	Fetal Lung	lung
17	chr4:79583800-79585000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:79583800-79585000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:79583800-79585200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr4:79583800-79585200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr4:79583800-79585400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:79583800-79585400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr4:79583800-79586000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:79583800-79588200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:79583800-79588200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr4:79583800-79588200	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr4:79583800-79588600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:79583800-79589000	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr4:79583800-79593000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:79584000-79585200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:79584000-79585200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr4:79584000-79588000	Weak transcription	Primary T cells from cord blood	blood
33	chr4:79584200-79585000	Weak transcription	Primary hematopoietic stem cells	blood
34	chr4:79584200-79585200	Enhancers	Brain Hippocampus Middle	brain
35	chr4:79584200-79585400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr4:79584200-79585400	Enhancers	Primary neutrophils fromperipheralblood	blood
37	chr4:79584200-79589000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr4:79584200-79589200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:79584400-79585600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:79584400-79587200	Weak transcription	Primary B cells from cord blood	blood
41	chr4:79584400-79587400	Weak transcription	HUVEC	blood vessel
42	chr4:79584400-79587600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr4:79584400-79588000	Weak transcription	Adipose Nuclei	Adipose
44	chr4:79584400-79589000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr4:79584400-79589200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:79584400-79589200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr4:79584400-79589200	Weak transcription	NHDF-Ad	bronchial
48	chr4:79584600-79585400	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr4:79584600-79587800	Weak transcription	GM12878-XiMat	blood

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