Variant report

Variant	rs4257676
Chromosome Location	chr4:79614877-79614878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:79608933..79617994-chr4:79691426..79702696,23	K562	blood:
2	chr4:79612799..79615666-chr4:79623635..79625663,2	K562	blood:
3	chr4:79612194..79615072-chr4:79639914..79642842,7	K562	blood:
4	chr4:79611783..79613882-chr4:79614566..79616143,2	MCF-7	breast:
5	chr4:79612403..79615054-chr4:79627599..79630387,2	K562	blood:
6	chr4:79599818..79602237-chr4:79613236..79615179,2	K562	blood:
7	chr4:79603993..79609685-chr4:79610850..79614972,9	K562	blood:
8	chr4:79581907..79584896-chr4:79611311..79615634,4	K562	blood:
9	chr4:79613754..79615926-chr4:79712733..79714899,2	K562	blood:
10	chr4:79608764..79617994-chr4:79689698..79699789,21	K562	blood:
11	chr4:79588490..79591389-chr4:79613550..79615288,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction
ENSG00000260278	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10008008	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10008069	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10084949	0.88[EUR][1000 genomes]
rs1134123	0.91[EUR][1000 genomes]
rs1134124	0.91[EUR][1000 genomes]
rs11724233	0.80[CHB][hapmap]
rs11931947	0.84[EUR][1000 genomes]
rs13101964	0.86[EUR][1000 genomes]
rs13110339	0.87[JPT][hapmap]
rs13133277	0.97[EUR][1000 genomes]
rs1346144	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1346145	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1469289	0.88[EUR][1000 genomes]
rs1469290	0.89[EUR][1000 genomes]
rs1532427	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs1582759	0.89[EUR][1000 genomes]
rs1806906	0.90[EUR][1000 genomes]
rs1834519	0.93[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1966537	0.88[EUR][1000 genomes]
rs2867465	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2867466	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2903578	0.88[EUR][1000 genomes]
rs4074675	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4254805	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs4264856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4321658	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4365753	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4472162	0.89[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs4472163	0.88[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.91[EUR][1000 genomes]
rs4495064	0.85[JPT][hapmap]
rs4560439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4619914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6533940	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6815367	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6818230	0.97[EUR][1000 genomes]
rs6825593	0.91[EUR][1000 genomes]
rs6842723	0.80[JPT][hapmap]
rs6855458	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7672208	0.91[EUR][1000 genomes]
rs7677162	0.91[EUR][1000 genomes]
rs7677783	0.85[JPT][hapmap]
rs7694971	0.91[EUR][1000 genomes]
rs7699519	0.91[EUR][1000 genomes]
rs7699905	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9992088	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79609000-79616000	Enhancers	NHDF-Ad	bronchial
2	chr4:79610000-79616400	Enhancers	Fetal Intestine Large	intestine
3	chr4:79610600-79617800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:79611400-79616200	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:79611600-79615200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:79611800-79616400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr4:79612200-79616400	Enhancers	Fetal Intestine Small	intestine
8	chr4:79612600-79615000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:79612600-79615000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr4:79613200-79615000	Enhancers	Fetal Heart	heart
11	chr4:79613400-79616000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:79613400-79616600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:79614000-79615000	Enhancers	Right Atrium	heart
14	chr4:79614200-79616200	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr4:79614600-79618200	Enhancers	K562	blood
16	chr4:79614800-79615000	Enhancers	Adipose Nuclei	Adipose
17	chr4:79614800-79615000	Enhancers	Rectal Mucosa Donor 29	rectum
18	chr4:79614800-79615200	Enhancers	Osteobl	bone
19	chr4:79614800-79615600	Enhancers	Primary monocytes fromperipheralblood	blood

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