Variant report

Variant	rs7677162
Chromosome Location	chr4:79627483-79627484
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79624848..79628540-chr4:79632254..79635758,6	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10008008	0.93[EUR][1000 genomes]
rs10008069	0.82[EUR][1000 genomes]
rs10084949	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1134123	0.82[EUR][1000 genomes]
rs1134124	0.82[EUR][1000 genomes]
rs11724233	0.87[ASN][1000 genomes]
rs11931947	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13101964	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13114489	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13133277	0.94[EUR][1000 genomes]
rs1346144	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1346145	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1469289	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1469290	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1582759	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1806906	0.82[EUR][1000 genomes]
rs1834519	0.90[EUR][1000 genomes]
rs1966537	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2867465	0.94[EUR][1000 genomes]
rs2867466	0.94[EUR][1000 genomes]
rs2903578	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4257676	0.91[EUR][1000 genomes]
rs4264856	0.90[EUR][1000 genomes]
rs4321658	0.91[EUR][1000 genomes]
rs4365753	0.91[EUR][1000 genomes]
rs4472162	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4472163	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4560439	0.90[EUR][1000 genomes]
rs4619914	0.91[EUR][1000 genomes]
rs6533940	0.94[EUR][1000 genomes]
rs6533951	0.88[ASN][1000 genomes]
rs6818230	0.94[EUR][1000 genomes]
rs6825593	0.89[EUR][1000 genomes]
rs6855458	0.89[EUR][1000 genomes]
rs7672208	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694971	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699519	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7699905	0.92[EUR][1000 genomes]
rs9992088	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79624800-79628800	Enhancers	Fetal Intestine Small	intestine
2	chr4:79625000-79628400	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr4:79625800-79627600	Enhancers	Brain Angular Gyrus	brain
4	chr4:79625800-79628400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr4:79625800-79628800	Enhancers	Brain Anterior Caudate	brain
6	chr4:79625800-79628800	Enhancers	Fetal Intestine Large	intestine
7	chr4:79625800-79629400	Enhancers	Brain Substantia Nigra	brain
8	chr4:79626000-79627600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr4:79626000-79627600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr4:79626000-79627600	Enhancers	HSMM	muscle
11	chr4:79626000-79628400	Enhancers	Brain Cingulate Gyrus	brain
12	chr4:79626000-79628800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:79626000-79628800	Enhancers	Fetal Heart	heart
14	chr4:79626000-79629400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr4:79626000-79629400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr4:79626000-79629400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:79626000-79629600	Enhancers	Primary B cells from peripheral blood	blood
18	chr4:79626000-79629600	Enhancers	Brain Hippocampus Middle	brain
19	chr4:79626200-79627600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:79626200-79629200	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr4:79626200-79629400	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr4:79626400-79628200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:79626400-79628400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:79626400-79631600	Weak transcription	HMEC	breast
25	chr4:79626600-79628200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr4:79626600-79628400	Weak transcription	HSMMtube	muscle
27	chr4:79626600-79628600	Enhancers	GM12878-XiMat	blood
28	chr4:79626600-79631600	Weak transcription	NHEK	skin
29	chr4:79626800-79628400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr4:79627000-79628200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:79627000-79628200	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr4:79627000-79629000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:79627200-79628400	Enhancers	K562	blood
34	chr4:79627200-79629200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr4:79627400-79628200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr4:79627400-79628400	Weak transcription	Small Intestine	intestine

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