Variant report

Variant	rs1469289
Chromosome Location	chr4:79634164-79634165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79624848..79626853-chr4:79632254..79635758,4	K562	blood:
2	chr4:79624848..79628540-chr4:79632254..79635758,6	K562	blood:
3	chr4:79632417..79635244-chr4:79639660..79644027,4	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10008008	0.90[EUR][1000 genomes]
rs10084949	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11724233	0.92[ASN][1000 genomes]
rs11931947	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13101964	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13114489	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13133277	0.91[EUR][1000 genomes]
rs1346144	0.94[EUR][1000 genomes]
rs1346145	0.94[EUR][1000 genomes]
rs1469290	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582759	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1834519	0.88[EUR][1000 genomes]
rs1966537	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2867465	0.91[EUR][1000 genomes]
rs2867466	0.91[EUR][1000 genomes]
rs2903578	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4257676	0.88[EUR][1000 genomes]
rs4264856	0.88[EUR][1000 genomes]
rs4321658	0.88[EUR][1000 genomes]
rs4365753	0.88[EUR][1000 genomes]
rs4472162	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4472163	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4560439	0.88[EUR][1000 genomes]
rs4619914	0.88[EUR][1000 genomes]
rs6533940	0.91[EUR][1000 genomes]
rs6533951	0.92[ASN][1000 genomes]
rs6818230	0.91[EUR][1000 genomes]
rs6825593	0.87[EUR][1000 genomes]
rs6855458	0.87[EUR][1000 genomes]
rs7672208	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7677162	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7694971	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699519	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699905	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79632400-79635000	Enhancers	K562	blood
2	chr4:79632600-79639200	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links