Variant report

Variant	rs6825593
Chromosome Location	chr4:79618112-79618113
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79595562..79598484-chr4:79616673..79619342,2	K562	blood:
2	chr4:79616898..79618818-chr4:79622032..79624929,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10008008	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10008069	0.82[EUR][1000 genomes]
rs10084949	0.87[EUR][1000 genomes]
rs1134123	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1134124	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11931947	0.83[EUR][1000 genomes]
rs13101964	0.84[EUR][1000 genomes]
rs13133277	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1346144	0.93[EUR][1000 genomes]
rs1346145	0.92[EUR][1000 genomes]
rs1469289	0.87[EUR][1000 genomes]
rs1469290	0.87[EUR][1000 genomes]
rs1582759	0.87[EUR][1000 genomes]
rs1806906	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1834519	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1966537	0.86[EUR][1000 genomes]
rs2867465	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2867466	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2903578	0.87[EUR][1000 genomes]
rs4074675	0.80[EUR][1000 genomes]
rs4257676	0.91[EUR][1000 genomes]
rs4264856	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4321658	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4365753	0.91[EUR][1000 genomes]
rs4472162	0.90[EUR][1000 genomes]
rs4472163	0.90[EUR][1000 genomes]
rs4560439	0.91[EUR][1000 genomes]
rs4619914	0.91[EUR][1000 genomes]
rs6533940	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6818230	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6855458	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7672208	0.89[EUR][1000 genomes]
rs7677162	0.89[EUR][1000 genomes]
rs7694971	0.89[EUR][1000 genomes]
rs7699519	0.89[EUR][1000 genomes]
rs7699905	0.93[EUR][1000 genomes]
rs9992088	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79614600-79618200	Enhancers	K562	blood

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