Variant report

Variant	rs13133277
Chromosome Location	chr4:79623174-79623175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79621501..79624076-chr4:79654459..79656761,2	K562	blood:
2	chr4:79619228..79620964-chr4:79621266..79623759,2	MCF-7	breast:
3	chr4:79616898..79618818-chr4:79622032..79624929,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10008008	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10008069	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10084949	0.91[EUR][1000 genomes]
rs1134123	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1134124	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11931947	0.87[EUR][1000 genomes]
rs13101964	0.88[EUR][1000 genomes]
rs1346144	0.96[EUR][1000 genomes]
rs1346145	0.90[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1469289	0.91[EUR][1000 genomes]
rs1469290	0.91[EUR][1000 genomes]
rs1582759	0.91[EUR][1000 genomes]
rs1806906	0.83[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1834519	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1966537	0.90[EUR][1000 genomes]
rs2867465	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2867466	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2903578	0.91[EUR][1000 genomes]
rs4074675	0.85[EUR][1000 genomes]
rs4257676	0.94[CEU][hapmap];0.97[EUR][1000 genomes]
rs4264856	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs4321658	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4365753	0.95[CEU][hapmap];0.97[EUR][1000 genomes]
rs4472162	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs4472163	0.86[CEU][hapmap];0.94[EUR][1000 genomes]
rs4560439	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4619914	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs6533940	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6815367	0.81[EUR][1000 genomes]
rs6818230	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6825593	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6855458	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7672208	0.94[EUR][1000 genomes]
rs7677162	0.94[EUR][1000 genomes]
rs7694971	0.94[EUR][1000 genomes]
rs7699519	0.94[EUR][1000 genomes]
rs7699905	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9992088	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79623000-79623600	Weak transcription	K562	blood

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