Variant report

Variant	rs1966537
Chromosome Location	chr4:79634522-79634523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79624848..79626853-chr4:79632254..79635758,4	K562	blood:
2	chr4:79624848..79628540-chr4:79632254..79635758,6	K562	blood:
3	chr4:79632417..79635244-chr4:79639660..79644027,4	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10008008	0.89[EUR][1000 genomes]
rs10008069	0.85[CHB][hapmap];0.95[TSI][hapmap]
rs10029214	0.81[TSI][hapmap]
rs10084949	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11724233	0.80[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs11931947	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13101964	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13114489	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13133277	0.90[EUR][1000 genomes]
rs1346144	0.93[EUR][1000 genomes]
rs1346145	1.00[ASW][hapmap];0.91[CEU][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[EUR][1000 genomes]
rs1469289	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1469290	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1582759	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1806906	0.95[TSI][hapmap]
rs1834519	0.81[CEU][hapmap];0.97[TSI][hapmap];0.87[EUR][1000 genomes]
rs2867465	0.90[EUR][1000 genomes]
rs2867466	0.90[EUR][1000 genomes]
rs2903578	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4257676	0.88[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.88[EUR][1000 genomes]
rs4264856	0.87[CEU][hapmap];0.85[CHB][hapmap];0.87[EUR][1000 genomes]
rs4321658	0.88[EUR][1000 genomes]
rs4365753	0.87[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs4472162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4472163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4495064	0.84[TSI][hapmap]
rs4560439	0.87[CEU][hapmap];0.85[CHB][hapmap];0.82[GIH][hapmap];0.80[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs4612	0.81[TSI][hapmap]
rs4619914	0.87[CEU][hapmap];0.84[CHB][hapmap];0.88[EUR][1000 genomes]
rs6533940	0.90[EUR][1000 genomes]
rs6533951	0.80[CEU][hapmap];0.95[CHB][hapmap];0.87[CHD][hapmap];0.82[GIH][hapmap];0.95[JPT][hapmap];0.87[MEX][hapmap];0.82[MKK][hapmap];0.81[TSI][hapmap];0.92[ASN][1000 genomes]
rs6818230	0.90[EUR][1000 genomes]
rs6825593	0.86[EUR][1000 genomes]
rs6842686	0.84[TSI][hapmap]
rs6842723	0.84[TSI][hapmap]
rs6855458	0.87[ASW][hapmap];0.82[CEU][hapmap];0.82[GIH][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs7672208	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7677162	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7694971	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699519	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7699905	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1966537	ANXA3	cis	cerebellum	SCAN
rs1966537	LIN54	cis	cerebellum	SCAN
rs1966537	CXCL10	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79632400-79635000	Enhancers	K562	blood
2	chr4:79632600-79639200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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