Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:79641529..79646816-chr4:79652433..79657132,8	K562	blood:
2	chr4:79646252..79649029-chr4:79649709..79652341,2	K562	blood:
3	chr4:79645064..79647940-chr4:79697484..79699389,2	K562	blood:

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10008069	0.80[CHB][hapmap]
rs10018189	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs10025599	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs10084949	0.92[ASN][1000 genomes]
rs11931947	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1275046	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs1275047	0.81[CHB][hapmap]
rs13101964	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13108247	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs13114489	0.84[ASN][1000 genomes]
rs1469289	0.92[ASN][1000 genomes]
rs1469290	0.92[ASN][1000 genomes]
rs1582759	0.90[ASN][1000 genomes]
rs1966537	0.92[ASN][1000 genomes]
rs2903578	0.92[ASN][1000 genomes]
rs3822106	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs4246708	0.85[ASN][1000 genomes]
rs4257676	0.80[CHB][hapmap]
rs4264856	0.81[CHB][hapmap]
rs4365753	0.80[CHB][hapmap]
rs4472162	0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4472163	0.80[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs4560439	0.80[CHB][hapmap]
rs4619914	0.80[CHB][hapmap]
rs6533951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6811782	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6858740	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs7672208	0.87[ASN][1000 genomes]
rs7677162	0.87[ASN][1000 genomes]
rs7688534	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs7694971	0.87[ASN][1000 genomes]
rs7699519	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79642800-79647800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr4:79642800-79662000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:79643800-79654800	Weak transcription	Right Atrium	heart
4	chr4:79644000-79647200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:79644000-79647800	Weak transcription	GM12878-XiMat	blood
6	chr4:79644000-79647800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:79644200-79647400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:79644200-79647400	Weak transcription	Primary B cells from cord blood	blood
9	chr4:79645600-79647200	Weak transcription	K562	blood

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