Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:79675645..79678606-chr4:79678648..79682266,4	K562	blood:
2	chr4:79675924..79678633-chr4:79679158..79682139,3	K562	blood:
3	chr4:79679599..79681509-chr4:79684030..79686056,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10018189	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs10025599	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs10034295	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11724233	0.81[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs1275046	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1275047	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13108247	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs13138117	0.81[CEU][hapmap]
rs1480718	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1979444	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2288254	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs3822106	0.86[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs3937772	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4472162	0.90[JPT][hapmap]
rs4472163	0.90[JPT][hapmap]
rs4512020	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6533951	0.80[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs6534083	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs6534090	0.80[CHB][hapmap]
rs6846743	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs6854347	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7688534	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1803379	chr4:79661618-79704210	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79671800-79682600	Weak transcription	K562	blood
2	chr4:79678200-79682000	Weak transcription	NHDF-Ad	bronchial
3	chr4:79678800-79679800	Enhancers	Fetal Intestine Large	intestine
4	chr4:79678800-79679800	Enhancers	Fetal Intestine Small	intestine
5	chr4:79678800-79679800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr4:79679400-79687400	Weak transcription	Rectal Mucosa Donor 29	rectum

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