Variant report

Variant	rs10034295
Chromosome Location	chr4:79864718-79864719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79859950..79862790-chr4:79863259..79866666,3	K562	blood:
2	chr4:79862625..79864770-chr4:79868680..79870409,2	K562	blood:

Variant related genes	Relation type
ENSG00000163291	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10018189	0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10023100	0.81[ASN][1000 genomes]
rs10025599	0.86[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11722437	0.91[ASN][1000 genomes]
rs1275045	0.85[ASN][1000 genomes]
rs1275046	0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1275047	0.86[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs13108247	0.86[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs13138117	0.82[MEX][hapmap]
rs1383425	0.87[ASN][1000 genomes]
rs1383426	0.86[ASN][1000 genomes]
rs1480718	0.90[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs1480733	0.87[ASN][1000 genomes]
rs1816184	0.87[LWK][hapmap]
rs1825022	0.87[ASN][1000 genomes]
rs1979444	0.86[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs2046104	0.93[ASN][1000 genomes]
rs2288254	0.85[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs3822106	0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs3937772	0.94[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs4512020	0.86[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs4576033	0.87[ASN][1000 genomes]
rs62308043	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6534083	0.86[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs6534085	0.90[ASN][1000 genomes]
rs6534086	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6534087	0.90[ASN][1000 genomes]
rs6534090	0.95[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs6846743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6854347	0.86[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs725500	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7656083	0.90[ASN][1000 genomes]
rs7658187	0.87[LWK][hapmap]
rs7688534	0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.85[ASN][1000 genomes]
rs931149	0.91[ASN][1000 genomes]
rs931150	0.91[ASN][1000 genomes]
rs9993426	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79863000-79865200	Weak transcription	K562	blood
2	chr4:79863200-79865400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:79863200-79865600	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr4:79863600-79865200	Weak transcription	Fetal Intestine Small	intestine
5	chr4:79864200-79865200	Weak transcription	Primary neutrophils fromperipheralblood	blood

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