Variant report

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10018189	0.80[ASN][1000 genomes]
rs10023100	0.81[ASN][1000 genomes]
rs10025599	0.87[ASN][1000 genomes]
rs10034295	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11722437	0.90[ASN][1000 genomes]
rs1275045	0.85[ASN][1000 genomes]
rs1275046	0.89[ASN][1000 genomes]
rs1275047	0.89[ASN][1000 genomes]
rs13108247	0.90[ASN][1000 genomes]
rs1383425	0.86[ASN][1000 genomes]
rs1383426	0.85[ASN][1000 genomes]
rs1480718	0.90[ASN][1000 genomes]
rs1480733	0.86[ASN][1000 genomes]
rs1825022	0.86[ASN][1000 genomes]
rs1979444	0.90[ASN][1000 genomes]
rs2046104	0.91[ASN][1000 genomes]
rs2288254	0.84[ASN][1000 genomes]
rs3822106	0.84[ASN][1000 genomes]
rs3937772	0.90[ASN][1000 genomes]
rs4512020	0.90[ASN][1000 genomes]
rs4576033	0.86[ASN][1000 genomes]
rs6534083	0.90[ASN][1000 genomes]
rs6534085	0.90[ASN][1000 genomes]
rs6534086	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6534087	0.90[ASN][1000 genomes]
rs6534090	0.92[ASN][1000 genomes]
rs6846743	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6854347	0.90[ASN][1000 genomes]
rs725500	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7656083	0.90[ASN][1000 genomes]
rs7688534	0.85[ASN][1000 genomes]
rs931149	0.90[ASN][1000 genomes]
rs931150	0.90[ASN][1000 genomes]
rs9993426	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879504	chr4:79759796-79874275	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79860800-79864200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:79861200-79862400	Enhancers	Small Intestine	intestine
3	chr4:79861400-79862400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:79861400-79862800	Enhancers	Fetal Intestine Large	intestine
5	chr4:79861400-79863200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:79861400-79863600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:79861400-79863600	Enhancers	Fetal Intestine Small	intestine
8	chr4:79861600-79863000	Enhancers	K562	blood
9	chr4:79861600-79863200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:79861600-79863400	Enhancers	Duodenum Mucosa	Duodenum
11	chr4:79861600-79864000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:79861600-79864200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr4:79861800-79862600	Enhancers	Dnd41	blood
14	chr4:79862000-79862800	Bivalent Enhancer	HepG2	liver

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