Variant report

Variant	rs10018189
Chromosome Location	chr4:79750698-79750699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79743779..79746797-chr4:79749010..79752930,4	K562	blood:
2	chr4:79749269..79751904-chr4:79770998..79773929,2	K562	blood:
3	chr4:79743529..79746797-chr4:79749528..79753927,4	K562	blood:

Variant related genes	Relation type
ENSG00000138756	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10023100	0.81[ASN][1000 genomes]
rs10025599	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10034295	0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs11724233	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs1275045	0.86[ASN][1000 genomes]
rs1275046	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1275047	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs13108247	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs13138117	0.95[CEU][hapmap]
rs1480718	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1979444	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2288254	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3822106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3937772	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4246708	0.85[ASN][1000 genomes]
rs4512020	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs62308043	0.80[ASN][1000 genomes]
rs6533951	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs6534083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6534085	0.90[ASN][1000 genomes]
rs6534086	0.90[ASN][1000 genomes]
rs6534087	0.90[ASN][1000 genomes]
rs6534090	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs6846743	0.85[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6854347	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7656083	0.90[ASN][1000 genomes]
rs7688534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792021	chr4:79661618-79784245	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1011365	chr4:79714695-79779723	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1007685	chr4:79732468-79788768	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79732400-79759200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:79738800-79793200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:79739200-79751200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr4:79744600-79793800	Weak transcription	Psoas Muscle	Psoas
5	chr4:79745400-79760400	Strong transcription	K562	blood
6	chr4:79745800-79786400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr4:79746400-79753200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:79746400-79753800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr4:79746600-79752000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr4:79746600-79753800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr4:79746600-79756000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:79746600-79761000	Strong transcription	Primary B cells from cord blood	blood
13	chr4:79746800-79751800	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr4:79746800-79752200	Strong transcription	Fetal Thymus	thymus
15	chr4:79746800-79752800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:79746800-79753800	Strong transcription	Primary hematopoietic stem cells	blood
17	chr4:79746800-79756400	Strong transcription	NHDF-Ad	bronchial
18	chr4:79746800-79760400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:79746800-79761000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:79746800-79783400	Weak transcription	A549	lung
21	chr4:79747000-79752800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr4:79747000-79759000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:79747200-79751400	Strong transcription	Fetal Intestine Small	intestine
24	chr4:79747200-79752200	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr4:79747200-79752200	Strong transcription	Primary neutrophils fromperipheralblood	blood
26	chr4:79747200-79752400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:79747200-79752400	Strong transcription	Fetal Intestine Large	intestine
28	chr4:79747200-79752400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr4:79747200-79752800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr4:79747200-79815600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr4:79747400-79751400	Strong transcription	Fetal Stomach	stomach
32	chr4:79747400-79752000	Strong transcription	Liver	Liver
33	chr4:79747400-79752200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:79747400-79752400	Strong transcription	Sigmoid Colon	Sigmoid Colon
35	chr4:79747600-79750800	Strong transcription	HMEC	breast
36	chr4:79747600-79753200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr4:79747600-79753600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr4:79747600-79756000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:79747800-79752400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr4:79747800-79753600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:79748000-79751400	Strong transcription	Fetal Muscle Leg	muscle
42	chr4:79748000-79752600	Strong transcription	Fetal Lung	lung
43	chr4:79748200-79751200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr4:79748400-79751400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr4:79748600-79751200	Strong transcription	HSMM	muscle
46	chr4:79748800-79755000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr4:79748800-79823600	Weak transcription	Small Intestine	intestine
48	chr4:79749200-79757800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr4:79749200-79773800	Weak transcription	Esophagus	oesophagus
50	chr4:79749200-79793600	Weak transcription	Brain Cingulate Gyrus	brain

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