Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10034295	0.90[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10857059	0.85[MEX][hapmap]
rs11722437	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1275047	0.80[JPT][hapmap]
rs1299129	0.85[MEX][hapmap]
rs13108247	0.95[MEX][hapmap]
rs1383425	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383426	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1480718	0.80[JPT][hapmap]
rs1825022	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1871706	0.85[MEX][hapmap]
rs1979444	0.95[MEX][hapmap]
rs2046104	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3775518	0.80[YRI][hapmap]
rs3937772	0.82[CHB][hapmap]
rs4512020	0.95[MEX][hapmap]
rs4576033	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62308043	0.86[ASN][1000 genomes]
rs6534090	0.94[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.84[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.91[TSI][hapmap];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6846743	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs6854347	0.95[MEX][hapmap]
rs725500	0.98[ASN][1000 genomes]
rs7664339	0.87[CEU][hapmap];0.85[MEX][hapmap]
rs7664587	0.85[MEX][hapmap]
rs7677084	0.81[CEU][hapmap]
rs931149	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs931150	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9993426	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1480733	ANXA3	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79870400-79881600	Weak transcription	Aorta	Aorta
2	chr4:79877600-79878400	Enhancers	K562	blood
3	chr4:79877600-79878600	Enhancers	Fetal Heart	heart
4	chr4:79878000-79878400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:79878000-79878400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr4:79878200-79878400	Enhancers	Fetal Brain Female	brain

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