Variant report

No.	Distal block	Cell Line	Cell type
1	chr4:79881444..79883280-chr4:79884971..79886860,2	K562	blood:
2	chr4:79879882..79882156-chr4:81153824..81155395,2	K562	blood:
3	chr4:79880722..79883280-chr4:79885360..79887391,2	K562	blood:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10018189	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs10025599	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs10034295	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs11722437	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1275046	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs1275047	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs13108247	0.84[JPT][hapmap]
rs1383425	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1480718	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs1480733	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1825022	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2046104	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2288254	0.85[CHB][hapmap]
rs3822106	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs3937772	0.89[CHB][hapmap];0.84[JPT][hapmap];0.81[AMR][1000 genomes]
rs4512020	0.84[JPT][hapmap]
rs4576033	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62308043	0.85[ASN][1000 genomes]
rs6534083	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs6534090	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6846743	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6854347	0.84[JPT][hapmap]
rs725500	0.94[ASN][1000 genomes]
rs7664339	0.81[CEU][hapmap]
rs7688534	0.84[JPT][hapmap]
rs931149	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs931150	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9993426	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79870400-79881600	Weak transcription	Aorta	Aorta
2	chr4:79880600-79881600	Weak transcription	Fetal Kidney	kidney
3	chr4:79881400-79884800	Enhancers	Muscle Satellite Cultured Cells	--

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