Variant report

Variant	rs11722437
Chromosome Location	chr4:79875768-79875769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:79875322..79875845-chr4:79962992..79963610,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10034295	0.91[ASN][1000 genomes]
rs1275045	0.81[AMR][1000 genomes]
rs1275046	0.81[ASN][1000 genomes]
rs1275047	0.81[ASN][1000 genomes]
rs13108247	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1383425	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1383426	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1480718	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1480733	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1825022	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1979444	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2046104	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3937772	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4512020	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4576033	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62308043	0.90[ASN][1000 genomes]
rs6534083	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6534085	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6534086	0.82[ASN][1000 genomes]
rs6534087	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6534090	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6846743	0.91[ASN][1000 genomes]
rs6854347	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs725500	0.95[ASN][1000 genomes]
rs7656083	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs931149	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931150	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9993426	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79870400-79881600	Weak transcription	Aorta	Aorta
2	chr4:79873600-79877600	Weak transcription	Fetal Heart	heart
3	chr4:79873800-79878000	Weak transcription	Fetal Brain Female	brain
4	chr4:79875400-79877600	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links