Variant report

Variant	rs6534603
Chromosome Location	chr4:128101884-128101885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10010552	1.00[AFR][1000 genomes]
rs1443179	1.00[AMR][1000 genomes]
rs4336239	1.00[AFR][1000 genomes]
rs6534599	1.00[AFR][1000 genomes]
rs7668919	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128101000-128102800	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:128101200-128102800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:128101400-128102600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:128101400-128102600	Enhancers	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links