Variant report

Variant	rs10010552
Chromosome Location	chr4:128006216-128006217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10002403	1.00[ASN][1000 genomes]
rs10023151	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029217	1.00[ASN][1000 genomes]
rs1031943	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098912	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155135	0.83[EUR][1000 genomes]
rs11937459	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511473	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107744	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125153	1.00[ASN][1000 genomes]
rs1372967	1.00[ASN][1000 genomes]
rs1383517	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383519	1.00[ASN][1000 genomes]
rs1383522	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480901	1.00[ASN][1000 genomes]
rs1480902	1.00[ASN][1000 genomes]
rs1480907	1.00[ASN][1000 genomes]
rs1480908	1.00[ASN][1000 genomes]
rs1480911	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480913	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531684	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531685	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054560	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083754	1.00[ASN][1000 genomes]
rs2127816	1.00[ASN][1000 genomes]
rs2170268	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106205	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340443	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340450	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240280	1.00[ASN][1000 genomes]
rs4336239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4365744	1.00[ASN][1000 genomes]
rs4833371	1.00[ASN][1000 genomes]
rs4834182	1.00[ASN][1000 genomes]
rs4834183	1.00[ASN][1000 genomes]
rs4834185	1.00[ASN][1000 genomes]
rs4834187	1.00[ASN][1000 genomes]
rs6534599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534603	1.00[AFR][1000 genomes]
rs6841506	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844804	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852817	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664962	1.00[ASN][1000 genomes]
rs7668919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674918	1.00[ASN][1000 genomes]
rs7691994	1.00[ASN][1000 genomes]
rs7692034	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353295	chr4:127994396-128017617	Enhancers Weak transcription ZNF genes & repeats	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128004800-128007600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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