Variant report

Variant	rs1480911
Chromosome Location	chr4:128059898-128059899
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10002403	1.00[ASN][1000 genomes]
rs10010552	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023151	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029217	1.00[ASN][1000 genomes]
rs1031943	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11098912	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1155135	0.91[EUR][1000 genomes]
rs11937459	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12511473	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107744	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13125153	1.00[ASN][1000 genomes]
rs1372967	1.00[ASN][1000 genomes]
rs1383517	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383519	1.00[ASN][1000 genomes]
rs1383522	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1480901	1.00[ASN][1000 genomes]
rs1480902	1.00[ASN][1000 genomes]
rs1480907	1.00[ASN][1000 genomes]
rs1480908	1.00[ASN][1000 genomes]
rs1480913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531684	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2054560	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2083754	1.00[ASN][1000 genomes]
rs2127816	1.00[ASN][1000 genomes]
rs2170268	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106205	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340443	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs340450	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4240280	1.00[ASN][1000 genomes]
rs4336239	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4365744	1.00[ASN][1000 genomes]
rs4833371	1.00[ASN][1000 genomes]
rs4834182	1.00[ASN][1000 genomes]
rs4834183	1.00[ASN][1000 genomes]
rs4834185	1.00[ASN][1000 genomes]
rs4834187	1.00[ASN][1000 genomes]
rs6534599	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534612	1.00[ASN][1000 genomes]
rs6841506	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6844804	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852817	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7664962	1.00[ASN][1000 genomes]
rs7668919	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7674918	1.00[ASN][1000 genomes]
rs7681026	0.97[AFR][1000 genomes]
rs7691994	1.00[ASN][1000 genomes]
rs7692034	1.00[ASN][1000 genomes]
rs7699873	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128053400-128061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:128059200-128060000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:128059400-128060000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:128059400-128060600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:128059600-128060000	Enhancers	HSMM	muscle
6	chr4:128059600-128060200	Enhancers	HSMMtube	muscle

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