Variant report

Variant	rs1155135
Chromosome Location	chr4:128064562-128064563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10010552	0.83[EUR][1000 genomes]
rs10023151	0.86[EUR][1000 genomes]
rs1031943	0.81[EUR][1000 genomes]
rs10518510	0.91[AFR][1000 genomes]
rs10518511	0.90[ASN][1000 genomes]
rs10518514	0.96[ASN][1000 genomes]
rs10518515	0.96[ASN][1000 genomes]
rs10518517	0.86[ASN][1000 genomes]
rs10518520	0.84[ASN][1000 genomes]
rs11098912	0.88[EUR][1000 genomes]
rs11098918	0.82[ASN][1000 genomes]
rs11098919	0.82[ASN][1000 genomes]
rs11937459	0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11939315	0.89[ASN][1000 genomes]
rs12511473	0.90[EUR][1000 genomes]
rs12649107	0.87[AFR][1000 genomes]
rs12649215	0.90[ASN][1000 genomes]
rs12649568	0.86[ASN][1000 genomes]
rs12649882	0.91[AFR][1000 genomes]
rs12651138	0.89[ASN][1000 genomes]
rs13107744	0.91[EUR][1000 genomes]
rs1383517	0.91[EUR][1000 genomes]
rs1383522	0.86[EUR][1000 genomes]
rs1480911	0.91[EUR][1000 genomes]
rs1480913	0.86[EUR][1000 genomes]
rs1531684	0.99[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1531685	0.91[EUR][1000 genomes]
rs17012078	0.90[ASN][1000 genomes]
rs17012097	0.90[ASN][1000 genomes]
rs17012138	0.96[ASN][1000 genomes]
rs17012147	0.98[ASN][1000 genomes]
rs17012149	0.98[ASN][1000 genomes]
rs1871736	0.90[ASN][1000 genomes]
rs2054560	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2170268	0.99[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs28798206	0.82[ASN][1000 genomes]
rs3106205	0.84[EUR][1000 genomes]
rs340443	0.84[EUR][1000 genomes]
rs340450	0.86[EUR][1000 genomes]
rs4270600	0.82[ASN][1000 genomes]
rs4336239	0.90[EUR][1000 genomes]
rs56786523	0.82[ASN][1000 genomes]
rs57081812	0.96[ASN][1000 genomes]
rs57701757	0.89[ASN][1000 genomes]
rs58916718	0.95[ASN][1000 genomes]
rs59789711	0.84[ASN][1000 genomes]
rs6534599	0.91[EUR][1000 genomes]
rs6841506	0.91[EUR][1000 genomes]
rs6844804	0.87[EUR][1000 genomes]
rs6852817	0.86[EUR][1000 genomes]
rs72925363	0.87[ASN][1000 genomes]
rs7668919	0.90[EUR][1000 genomes]
rs7699873	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128061000-128065600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:128061200-128067800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:128062600-128066000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:128062600-128066800	Enhancers	HSMMtube	muscle
5	chr4:128062600-128067000	Enhancers	HSMM	muscle
6	chr4:128063200-128066200	Weak transcription	Adipose Nuclei	Adipose
7	chr4:128063600-128064600	Weak transcription	NH-A	brain
8	chr4:128063800-128065400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:128064000-128064800	Weak transcription	NHDF-Ad	bronchial
10	chr4:128064000-128065400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:128064200-128065800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:128064200-128066200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:128064400-128064600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:128064400-128065000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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