Variant report

Variant	rs57701757
Chromosome Location	chr4:128117402-128117403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10013046	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10518511	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10518514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10518515	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10518517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10518520	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11098918	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11098919	0.93[ASN][1000 genomes]
rs1155135	0.89[ASN][1000 genomes]
rs11939315	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12639943	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12649215	0.95[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12649568	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12651138	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1443067	0.86[EUR][1000 genomes]
rs17011996	0.91[AMR][1000 genomes]
rs17012000	0.91[AMR][1000 genomes]
rs17012020	0.91[AMR][1000 genomes]
rs17012036	0.91[AMR][1000 genomes]
rs17012038	0.91[AMR][1000 genomes]
rs17012040	0.91[AMR][1000 genomes]
rs17012078	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17012097	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17012138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17012147	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17012149	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17012312	0.86[EUR][1000 genomes]
rs17012314	1.00[EUR][1000 genomes]
rs17012316	1.00[EUR][1000 genomes]
rs17012372	1.00[EUR][1000 genomes]
rs17012378	0.86[EUR][1000 genomes]
rs1822359	1.00[EUR][1000 genomes]
rs1871736	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28493833	0.86[EUR][1000 genomes]
rs28798206	0.93[ASN][1000 genomes]
rs35767037	0.86[EUR][1000 genomes]
rs4270600	0.93[ASN][1000 genomes]
rs4274865	1.00[EUR][1000 genomes]
rs4306971	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56786523	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56822169	0.91[AMR][1000 genomes]
rs57081812	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58916718	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59218603	1.00[EUR][1000 genomes]
rs59451076	1.00[EUR][1000 genomes]
rs59789711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61513058	0.86[EUR][1000 genomes]
rs6831453	1.00[EUR][1000 genomes]
rs72925363	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72929404	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929408	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929409	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72929411	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72929490	0.86[EUR][1000 genomes]
rs72929494	0.86[EUR][1000 genomes]
rs755815	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7657020	1.00[EUR][1000 genomes]
rs920737	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879914	chr4:128005362-128123638	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128116800-128118000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:128117000-128117800	Weak transcription	Gastric	stomach
3	chr4:128117000-128118600	Enhancers	Fetal Stomach	stomach

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