Variant report

Variant	rs6831453
Chromosome Location	chr4:128245140-128245141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10013046	0.86[EUR][1000 genomes]
rs10518514	1.00[EUR][1000 genomes]
rs10518515	1.00[EUR][1000 genomes]
rs10518517	1.00[EUR][1000 genomes]
rs10518520	0.86[EUR][1000 genomes]
rs11098918	1.00[EUR][1000 genomes]
rs12639943	0.83[EUR][1000 genomes]
rs12649568	1.00[EUR][1000 genomes]
rs1443067	0.86[EUR][1000 genomes]
rs17012138	1.00[EUR][1000 genomes]
rs17012147	1.00[EUR][1000 genomes]
rs17012149	1.00[EUR][1000 genomes]
rs17012312	0.86[EUR][1000 genomes]
rs17012314	1.00[EUR][1000 genomes]
rs17012316	1.00[EUR][1000 genomes]
rs17012372	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17012378	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1822359	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28493833	0.86[EUR][1000 genomes]
rs35767037	0.86[EUR][1000 genomes]
rs4274865	1.00[EUR][1000 genomes]
rs4306971	0.86[EUR][1000 genomes]
rs56786523	0.86[EUR][1000 genomes]
rs57081812	1.00[EUR][1000 genomes]
rs57701757	1.00[EUR][1000 genomes]
rs58916718	1.00[EUR][1000 genomes]
rs59218603	1.00[EUR][1000 genomes]
rs59451076	1.00[EUR][1000 genomes]
rs59789711	1.00[EUR][1000 genomes]
rs61513058	0.86[EUR][1000 genomes]
rs72925363	1.00[EUR][1000 genomes]
rs72929404	0.86[EUR][1000 genomes]
rs72929408	0.86[EUR][1000 genomes]
rs72929409	0.86[EUR][1000 genomes]
rs72929411	0.86[EUR][1000 genomes]
rs72929490	0.86[EUR][1000 genomes]
rs72929494	0.86[EUR][1000 genomes]
rs73849511	0.92[AFR][1000 genomes]
rs755815	1.00[EUR][1000 genomes]
rs7657020	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7672250	0.92[AFR][1000 genomes]
rs7696121	0.92[AFR][1000 genomes]
rs920737	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031024	chr4:128152969-128264539	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv1030334	chr4:128177890-128333424	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1025205	chr4:128182107-128336881	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128244600-128246000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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